From 143a808a528e4be527961a09e3abac8672f40bde Mon Sep 17 00:00:00 2001 From: Delphine-L Date: Mon, 6 Nov 2023 15:23:46 -0500 Subject: [PATCH 1/2] Makes test more lenient --- .../Assembly-decontamination-VGP9-tests.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml index 3ebcb1751..4e04d3adc 100644 --- a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml +++ b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml @@ -9,6 +9,6 @@ full contaminant + mito scaffold list: file: test-data/full contaminant + mito scaffold list.txt compare: diff - lines_diff: 1 + lines_diff: 2 final decontaminated assembly: checksum: 'sha1$8a413a18525c11fc0da27c07992b968490e0c1b9' \ No newline at end of file From a9ac6230b38b2ee3a8299eb92e97a2e00cdf07d4 Mon Sep 17 00:00:00 2001 From: Marius van den Beek Date: Tue, 7 Nov 2023 17:44:13 +0100 Subject: [PATCH 2/2] Sort outputs before comparing --- .../Assembly-decontamination-VGP9-tests.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml index 4e04d3adc..01e777d51 100644 --- a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml +++ b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml @@ -9,6 +9,6 @@ full contaminant + mito scaffold list: file: test-data/full contaminant + mito scaffold list.txt compare: diff - lines_diff: 2 + sort: true final decontaminated assembly: checksum: 'sha1$8a413a18525c11fc0da27c07992b968490e0c1b9' \ No newline at end of file