Skip to content

Commit

Permalink
Merge pull request #347 from planemo-autoupdate/workflows/VGP-assembl…
Browse files Browse the repository at this point in the history 
…y-v2/Scaffolding-Bionano-VGP7

Updating workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7 from 0.1.1 to 0.1.2
  • Loading branch information
@bgruening
bgruening authored Mar 6, 2024
2 parents e3b5950 + 697f786 commit 3b8a113
Show file tree
Hide file tree
Showing 2 changed files with 122 additions and 21 deletions.
5 changes: 5 additions & 0 deletions workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/CHANGELOG.md
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,10 @@
# Changelog

## [0.1.2] 2024-03-04

### Automatic update
- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0`

## [0.1.1] 2023-11-14

### Automatic update
Expand Down
138 changes: 117 additions & 21 deletions workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/Scaffolding-BioNano-VGP7.ga
View file
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@
],
"format-version": "0.1",
"license": "CC-BY-4.0",
"release": "0.1.1",
"release": "0.1.2",
"name": "Scaffolding-BioNano-VGP7",
"steps": {
"0": {
Expand Down Expand Up @@ -142,7 +142,12 @@
"output_name": "output"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Parse parameter value",
"name": "input1"
}
],
"label": null,
"name": "Parse parameter value",
"outputs": [
Expand Down Expand Up @@ -182,6 +187,10 @@
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "input_file"
},
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
Expand Down Expand Up @@ -233,7 +242,20 @@
"output_name": "output"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Bionano Hybrid Scaffold",
"name": "bionano_cmap"
},
{
"description": "runtime parameter for tool Bionano Hybrid Scaffold",
"name": "conflict_resolution"
},
{
"description": "runtime parameter for tool Bionano Hybrid Scaffold",
"name": "ngs_fasta"
}
],
"label": null,
"name": "Bionano Hybrid Scaffold",
"outputs": [
Expand Down Expand Up @@ -352,7 +374,16 @@
"output_name": "ngs_contigs_scaffold_agp"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "input_file"
},
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
}
],
"label": null,
"name": "gfastats",
"outputs": [
Expand Down Expand Up @@ -413,6 +444,10 @@
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "input_file"
},
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
Expand Down Expand Up @@ -474,7 +509,12 @@
"output_name": "integer_param"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "input_file"
}
],
"label": null,
"name": "gfastats",
"outputs": [
Expand Down Expand Up @@ -527,7 +567,12 @@
"output_name": "output"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "input_file"
}
],
"label": null,
"name": "gfastats",
"outputs": [
Expand Down Expand Up @@ -576,6 +621,7 @@
"subworkflow": {
"a_galaxy_workflow": "true",
"annotation": "",
"comments": [],
"format-version": "0.1",
"name": "gfastats_data_prep",
"steps": {
Expand Down Expand Up @@ -617,7 +663,12 @@
"output_name": "output"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Sort",
"name": "input"
}
],
"label": null,
"name": "Sort",
"outputs": [
Expand Down Expand Up @@ -647,7 +698,7 @@
},
"2": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2",
"content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0",
"errors": null,
"id": 2,
"input_connections": {
Expand All @@ -656,7 +707,12 @@
"output_name": "out_file1"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Text reformatting",
"name": "infile"
}
],
"label": null,
"name": "Text reformatting",
"outputs": [
Expand All @@ -676,15 +732,15 @@
"output_name": "outfile"
}
},
"tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2",
"tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0",
"tool_shed_repository": {
"changeset_revision": "d698c222f354",
"changeset_revision": "12615d397df7",
"name": "text_processing",
"owner": "bgruening",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"code\": \"{total += $2; $3 = total}1\", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "1.1.2",
"tool_version": "9.3+galaxy0",
"type": "tool",
"uuid": "69c7b2e7-5c82-49ec-8301-737e5ec1739b",
"when": null,
Expand All @@ -701,7 +757,12 @@
"output_name": "outfile"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Datamash",
"name": "in_file"
}
],
"label": null,
"name": "Datamash",
"outputs": [
Expand Down Expand Up @@ -746,7 +807,12 @@
"output_name": "outfile"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Add column",
"name": "input"
}
],
"label": null,
"name": "Add column",
"outputs": [
Expand Down Expand Up @@ -785,7 +851,12 @@
"output_name": "out_file"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Parse parameter value",
"name": "input1"
}
],
"label": null,
"name": "Parse parameter value",
"outputs": [
Expand Down Expand Up @@ -873,7 +944,12 @@
"output_name": "out1"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Compute",
"name": "input"
}
],
"label": null,
"name": "Compute",
"outputs": [
Expand Down Expand Up @@ -917,7 +993,7 @@
}
},
"tags": "",
"uuid": "ee2567e9-9666-43d3-9bf9-939b48e56573"
"uuid": "8c62f0a6-3009-43d0-b986-5a7909c91474"
},
"tool_id": null,
"type": "subworkflow",
Expand All @@ -936,7 +1012,12 @@
"output_name": "gfastats data for plotting"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Cut",
"name": "input"
}
],
"label": null,
"name": "Cut",
"outputs": [
Expand Down Expand Up @@ -975,7 +1056,12 @@
"output_name": "gfastats data for plotting"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Cut",
"name": "input"
}
],
"label": null,
"name": "Cut",
"outputs": [
Expand Down Expand Up @@ -1014,7 +1100,12 @@
"output_name": "out_file1"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Scatterplot with ggplot2",
"name": "input1"
}
],
"label": null,
"name": "Scatterplot with ggplot2",
"outputs": [
Expand Down Expand Up @@ -1067,7 +1158,12 @@
"output_name": "out_file1"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Scatterplot with ggplot2",
"name": "input1"
}
],
"label": null,
"name": "Scatterplot with ggplot2",
"outputs": [
Expand Down

0 comments on commit 3b8a113

Please sign in to comment.