Merge pull request #537 from clsiguret/bacterial-genome-assembly_update

Fixing test in workflows/genome-assembly/bacterial-genome-assembly

workflows/genome-assembly/bacterial-genome-assembly/bacterial_genome_assembly-tests.yml

@@ -10,41 +10,41 @@
       filetype: fastqsanger.gz
   outputs:
     shovill_contigs_graph:
-      assert:
-        has_n_lines:
-          n: 18
+      asserts:
+        has_text:
+          text: "KC:i"
     shovill_logfile:
-      assert:
+      asserts:
         has_text:
           text: "[shovill] Done."
     shovill_contigs_fasta:
-      assert:
+      asserts:
         has_text:
           text: ">contig00001"
     quast_report_tabular:
-      assert:
+      asserts:
         has_n_columns:
           n: 2
         has_text:
           text: "shovill_contigs_fasta"
     quast_log:
-      assert:
+      asserts:
         has_text:
           text: "Thank you for using QUAST!"
     refseqmasher_report_tabular:
-      assert:
+      asserts:
         has_text:
           text: "Enterococcus faecalis"
         has_n_columns:
           n: 21
     bandage_contig_graph_stats:
-      assert:
+      asserts:
         has_text:
           text: "Total length orphaned nodes (bp):"
         has_n_columns:
           n: 2
     tooldistillator_summarize:
-      assert:
+      asserts:
         has_text:
           text: "\"Assembly\": \"shovill_contigs_fasta\""
         has_text: