fix test syntax

galaxyproject · Sep 25, 2024 · 5d18e26 · 5d18e26
1 parent cbb709d
commit 5d18e26
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Showing 2 changed files with 4 additions and 10 deletions.
diff --git a/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex-tests.yml b/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex-tests.yml
@@ -54,15 +54,13 @@
     Number of expected cells: 500
   outputs:
     MultiQC_STARsolo:
-      class: File
       asserts:
         - that: "has_text_matching"
           expression: ">subsample</th><td class=\"data-coloured mqc-generalstats-star-uniquely_mapped_percent \"><div class=\"wrapper\"><span class=\"bar\""
         - that: "has_text_matching"
           expression: "></span><span class=\"val\">3[0-9].[0-9]%</span></div></td><td class=\"data-coloured mqc-generalstats-star-uniquely_mapped \"><div class=\"wrapper\"><span class=\"bar\""
     Seurat input for gene expression (filtered):
-      class: Collection
-      collection_type: list:list
+      attributes: { collection_type: list:list }
       element_tests:
         subsample:
           elements:
@@ -79,8 +77,7 @@
                 has_line:
                   line: "FBgn0250732	gfzf"
     CITE-seq-Count report:
-      class: Collection
-      collection_type: list
+      attributes: { collection_type: list }
       element_tests:
         subsample:
           asserts:
@@ -93,8 +90,7 @@
             - that: "has_line"
               line: "Percentage unmapped: 1"
     Seurat input for CMO (UMI):
-      class: Collection
-      collection_type: list:list
+      attributes: { collection_type: list:list }
       element_tests:
         subsample:
           elements:

diff --git a/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3-tests.yml b/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3-tests.yml
@@ -29,15 +29,13 @@
       filetype: tabular
   outputs:
     'MultiQC on input dataset(s): Webpage':
-      class: File
       asserts:
         - that: "has_text_matching"
           expression: ">subsample</th><td class=\"data-coloured mqc-generalstats-star-uniquely_mapped_percent \"><div class=\"wrapper\"><span class=\"bar\""
         - that: "has_text_matching"
           expression: "></span><span class=\"val\">3[0-9].[0-9]%</span></div></td><td class=\"data-coloured mqc-generalstats-star-uniquely_mapped \"><div class=\"wrapper\"><span class=\"bar\""
     Seurat input for gene expression (filtered):
-      class: Collection
-      collection_type: list:list
+      attributes: { collection_type: list:list }
       element_tests:
         subsample:
           elements: