Merge pull request #242 from Delphine-L/VGP1-update

Vgp1 update
galaxyproject · Oct 30, 2023 · bdd0a50 · bdd0a50
2 parents 41104f0 + ca924de
commit bdd0a50
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Showing 11 changed files with 93 additions and 140 deletions.
diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation/.dockstore.yml b/workflows/VGP-assembly-v2/VGP-meryldb-creation/.dockstore.yml
diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/.dockstore.yml b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/.dockstore.yml
@@ -0,0 +1,5 @@
+version: 1.2
+workflows:
+- name: main
+  primaryDescriptorPath: /kmer-profiling-hifi-VGP1.ga
+  subclass: Galaxy
diff --git a/...-v2/VGP-meryldb-creation/.workflowhub.yml → ...kmer-profiling-hifi-VGP1/.workflowhub.yml b/...-v2/VGP-meryldb-creation/.workflowhub.yml → ...kmer-profiling-hifi-VGP1/.workflowhub.yml
diff --git a/...mbly-v2/VGP-meryldb-creation/CHANGELOG.md → ...-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md b/...mbly-v2/VGP-meryldb-creation/CHANGELOG.md → ...-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md
@@ -6,7 +6,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
-
+## [0.1.1] - 2023-10-30
+### Changed
+- Names of the workflow and viles for consistency with other VGP workflows
+- Labels and tags for user readability
+
 ## [0.1] - 2021-08-26
 ### Added
 - First version of the workflow. 
diff --git a/...ssembly-v2/VGP-meryldb-creation/README.md → ...bly-v2/kmer-profiling-hifi-VGP1/README.md b/...ssembly-v2/VGP-meryldb-creation/README.md → ...bly-v2/kmer-profiling-hifi-VGP1/README.md
diff --git a/...ryldb-creation/meryldb-creation-tests.yml → ...ifi-VGP1/kmer-profiling-hifi-VGP1-test.ga b/...ryldb-creation/meryldb-creation-tests.yml → ...ifi-VGP1/kmer-profiling-hifi-VGP1-test.ga
@@ -1,4 +1,4 @@
-- doc: Test outline for meryldb-creation.ga
+- doc: Test outline for kmer-profiling-hifi-VGP1.ga
   job:
     Collection of Pacbio Data:
       class: Collection
@@ -31,19 +31,13 @@
       file: test-data/GenomeScope_Transformed_log_plot.png
       compare: sim_size
       delta: 10000
-    GenomeScope model:
-      asserts:
-        has_text:
-            text: 'Residual standard error: 577.3 on 159 degrees of freedom'
-        has_text:
-            text: 'Number of iterations to convergence: 18'
     GenomeScope summary:
       asserts:
         has_text:
             text: '27,842 bp'
         has_text:
             text: '35,913 bp'
-    GenomeScope model parameters:
+    GenomeScope Model Parameters:
       asserts:
         has_text:
             text: '0.0918418396430493'