From c44a614084bb771286cd865d0cec8886db364339 Mon Sep 17 00:00:00 2001 From: planemo-autoupdate Date: Mon, 28 Oct 2024 05:13:28 +0000 Subject: [PATCH] Updating workflows/variant-calling/generic-variant-calling-wgs-pe from 0.1.1 to 0.1.2 --- .../CHANGELOG.md | 14 + ...neric-variation-analysis-on-WGS-PE-data.ga | 1566 ++++++++--------- 2 files changed, 796 insertions(+), 784 deletions(-) diff --git a/workflows/variant-calling/generic-variant-calling-wgs-pe/CHANGELOG.md b/workflows/variant-calling/generic-variant-calling-wgs-pe/CHANGELOG.md index e76df1cd1..8ae4d267a 100644 --- a/workflows/variant-calling/generic-variant-calling-wgs-pe/CHANGELOG.md +++ b/workflows/variant-calling/generic-variant-calling-wgs-pe/CHANGELOG.md @@ -1,5 +1,19 @@ # Changelog +## [0.1.2] 2024-10-28 + +### Automatic update +- `toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy2` +- `toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/5.2+galaxy0` +- `toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.2` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.18` +- `toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.13+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.20+galaxy3` +- `toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/3.1.1.0` +- `toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.5` +- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0` +- `toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy1` +- `toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy3` +- `toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/5.2+galaxy0` + ## [0.1.1] 2023-11-20 diff --git a/workflows/variant-calling/generic-variant-calling-wgs-pe/Generic-variation-analysis-on-WGS-PE-data.ga b/workflows/variant-calling/generic-variant-calling-wgs-pe/Generic-variation-analysis-on-WGS-PE-data.ga index 150a82224..918515610 100644 --- a/workflows/variant-calling/generic-variant-calling-wgs-pe/Generic-variation-analysis-on-WGS-PE-data.ga +++ b/workflows/variant-calling/generic-variant-calling-wgs-pe/Generic-variation-analysis-on-WGS-PE-data.ga @@ -1,801 +1,799 @@ { - 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