Updating workflows/epigenetics/consensus-peaks from 1.1 to 1.2

[gxydevbot]

Hello! This is an automated update of the following workflow: workflows/epigenetics/consensus-peaks. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

• toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.15.1+galaxy2 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.20+galaxy3
• toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0
• toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.15.1+galaxy2 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.20+galaxy3
• toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0
• toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.15.1+galaxy2 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.20+galaxy3
• toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0

The workflow release number has been updated from 1.1 to 1.2.

[lldelisle]

I am waiting for the autoupdate of the other workflows of the directory.

[gxydevbot]

There are new updates, they have been integrated to the PR, check the file diff.

[mvdbeek]

Attention: deployment skipped!

https://github.com/galaxyproject/iwc/actions/runs/11022045695

[mvdbeek]

Attention: deployment skipped!

https://github.com/galaxyproject/iwc/actions/runs/11022045695

[lldelisle]

I have a Could not get container description for tool 'toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.31.1+galaxy0' (https://github.com/galaxyproject/iwc/actions/runs/11022045695/job/30611417989#step:6:7743) while bedtools has not been upgraded and in the CI of the PR I got https://github.com/galaxyproject/iwc/actions/runs/11021689499/job/30629513965#step:6:9598 galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-09-25 08:08:38,705 [pN:main.1,p:5350,tN:LocalRunner.work_thread-3] Image name for tool toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.31.1+galaxy0: mulled-v2-8186960447c5cb2faa697666dc1e6d919ad23f3e:caa33073524aca7a4919ccd6ac088104e51e441a. Any idea?

[mvdbeek]

That's quay.io failing to respond to the request that lists container images. A rerun will likely work

[lldelisle]

OK, I run it twice but let's hope at the end it will work.
Thanks

[lldelisle]

The third time was the good one.