diff --git a/workflows/genome-assembly/bacterial-genome-assembly/bacterial_genome_assembly-tests.yml b/workflows/genome-assembly/bacterial-genome-assembly/bacterial_genome_assembly-tests.yml index b184f0a50..8f9012b89 100644 --- a/workflows/genome-assembly/bacterial-genome-assembly/bacterial_genome_assembly-tests.yml +++ b/workflows/genome-assembly/bacterial-genome-assembly/bacterial_genome_assembly-tests.yml @@ -10,41 +10,41 @@ filetype: fastqsanger.gz outputs: shovill_contigs_graph: - assert: - has_n_lines: - n: 18 + asserts: + has_text: + text: "KC:i" shovill_logfile: - assert: + asserts: has_text: text: "[shovill] Done." shovill_contigs_fasta: - assert: + asserts: has_text: text: ">contig00001" quast_report_tabular: - assert: + asserts: has_n_columns: n: 2 has_text: text: "shovill_contigs_fasta" quast_log: - assert: + asserts: has_text: text: "Thank you for using QUAST!" refseqmasher_report_tabular: - assert: + asserts: has_text: text: "Enterococcus faecalis" has_n_columns: n: 21 bandage_contig_graph_stats: - assert: + asserts: has_text: text: "Total length orphaned nodes (bp):" has_n_columns: n: 2 tooldistillator_summarize: - assert: + asserts: has_text: text: "\"Assembly\": \"shovill_contigs_fasta\"" has_text: