Implement run/test/workflow_edit/autoupdate from non default tool sheds #1836
Workflow file for this run
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| name: Python CI | |
| on: [push, pull_request] | |
| env: | |
| PLANEMO_ENABLE_POSTGRES_TESTS: 1 | |
| PLANEMO_SKIP_GALAXY_CWL_TESTS: 1 | |
| PLANEMO_TEST_WORKFLOW_RUN_PROFILE: 1 | |
| PGPASSWORD: postgres | |
| PGHOST: localhost | |
| GIT_AUTHOR_NAME: planemo | |
| GIT_AUTHOR_EMAIL: planemo@galaxyproject.org | |
| GIT_COMMITTER_NAME: planemo | |
| GIT_COMMITTER_EMAIL: planemo@galaxyproject.org | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 100 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.8'] | |
| tox-action: | |
| - lint | |
| - mypy | |
| - unit-quick | |
| #- unit-diagnostic-servebasic | |
| #- unit-diagnostic-servebasic-gx-2005 | |
| #- unit-diagnostic-servebasic-gx-master | |
| - unit-diagnostic-servebasic-gx-dev | |
| #- unit-diagnostic-servetraining | |
| #- unit-diagnostic-servecmd | |
| #- unit-diagnostic-trainingwfcmd | |
| - unit-nonredundant-noclientbuild-noshed-gx-2109 | |
| - unit-nonredundant-noclientbuild-noshed-gx-2205 | |
| - unit-nonredundant-noclientbuild-noshed-gx-dev | |
| - unit-nonredundant-noclientbuild-noshed-nogx | |
| - unit-diagnostic-serveclientcmd | |
| include: | |
| - python-version: '3.11' | |
| tox-action: lint | |
| - python-version: '3.11' | |
| tox-action: mypy | |
| - python-version: '3.11' | |
| tox-action: unit-quick | |
| - python-version: '3.11' | |
| tox-action: lint_docs | |
| services: | |
| postgres: | |
| image: postgres:10.8 | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: postgres | |
| ports: | |
| - 5432:5432 | |
| # needed because the postgres container does not provide a healthcheck | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| submodules: true | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Test psql | |
| run: | | |
| psql --tuples-only --username postgres -P pager=off --list | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| python -m pip install tox coveralls | |
| - name: Checkout system space | |
| run: | | |
| df | |
| - name: Test with tox | |
| run: | | |
| TOXENV=$(echo $TOXENV | sed 's/\.//') tox | |
| env: | |
| TOXENV: py${{ matrix.python-version }}-${{ matrix.tox-action }} | |
| deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| submodules: true | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: '18.12.1' | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Install dependencies | |
| run: | | |
| python3 -m pip install --upgrade pip setuptools | |
| python3 -m pip install --upgrade twine wheel | |
| - name: Create and check packages | |
| run: | | |
| make dist | |
| - name: Publish to PyPI | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.pypi_password }} |