setup.py

#!/usr/bin/env python

import ast
import os
import re
import sys

try:
    from setuptools import setup
except ImportError:
    from distutils.core import setup

if sys.version_info < (3, 7):
    sys.stderr.write("ERROR: planemo requires at least Python version 3.7\n")
    sys.exit(1)

# Allow installer to turn off dependency on lxml by setting the environment variable
# PLANEMO_REQUIRE_LXML to "0". lxml should be considered optional if xmllint is
# available on the PATH - but python doesn't really provide me a fantastic way to
# express that.
DEFAULT_PLANEMO_REQUIRE_LXML = 1
PLANEMO_REQUIRE_LXML = os.environ.get("PLANEMO_REQUIRE_LXML", "%d" % DEFAULT_PLANEMO_REQUIRE_LXML) != "0"

SOURCE_DIR = "planemo"

_version_re = re.compile(r"__version__\s+=\s+(.*)")

with open("%s/__init__.py" % SOURCE_DIR, "rb") as f:
    init_contents = f.read().decode("utf-8")

    def get_var(var_name):
        pattern = re.compile(r"%s\s+=\s+(.*)" % var_name)
        match = pattern.search(init_contents).group(1)
        return str(ast.literal_eval(match))

    version = get_var("__version__")
    PROJECT_NAME = get_var("PROJECT_NAME")
    PROJECT_URL = get_var("PROJECT_URL")
    PROJECT_AUTHOR = get_var("PROJECT_AUTHOR")
    PROJECT_EMAIL = get_var("PROJECT_EMAIL")

PROJECT_DESCRIPTION = (
    "Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/)."
)
PACKAGES = [
    "planemo",
    "planemo.autopygen",
    "planemo.autopygen.commands",
    "planemo.autopygen.source_file_parsing",
    "planemo.autopygen.xml",
    "planemo.cwl",
    "planemo.commands",
    "planemo.database",
    "planemo.engine",
    "planemo.galaxy",
    "planemo.galaxy.test",
    "planemo.linters",
    "planemo.reports",
    "planemo.shed",
    "planemo.shed2tap",
    "planemo.test",
    "planemo.training",
    "planemo.xml",
]
ENTRY_POINTS = """
    [console_scripts]
    planemo=planemo.cli:planemo
"""
PACKAGE_DATA = {
    "planemo": [
        "xml/xsd/repository_dependencies.xsd",
        "xml/xsd/tool_dependencies.xsd",
        "reports/*",
        "scripts/*",
    ],
}
PACKAGE_DIR = {
    SOURCE_DIR: SOURCE_DIR,
}

with open("README.rst") as fh:
    readme = fh.read()
with open("HISTORY.rst") as fh:
    history = fh.read().replace(".. :changelog:", "")

if os.path.exists("requirements.txt"):
    with open("requirements.txt") as fh:
        requirements = [r for r in fh.read().split("\n")]
    if not PLANEMO_REQUIRE_LXML:
        requirements.remove("lxml")
else:
    # In tox, it will cover them anyway.
    requirements = []

setup(
    name=PROJECT_NAME,
    version=version,
    description=PROJECT_DESCRIPTION,
    long_description=readme + "\n\n" + history,
    long_description_content_type="text/x-rst",
    author=PROJECT_AUTHOR,
    author_email=PROJECT_EMAIL,
    url=PROJECT_URL,
    packages=PACKAGES,
    entry_points=ENTRY_POINTS,
    package_data=PACKAGE_DATA,
    package_dir=PACKAGE_DIR,
    include_package_data=True,
    install_requires=requirements,
    license="MIT",
    zip_safe=False,
    keywords="planemo",
    classifiers=[
        "Development Status :: 5 - Production/Stable",
        "Intended Audience :: Developers",
        "Environment :: Console",
        "License :: OSI Approved :: MIT License",
        "Operating System :: POSIX",
        "Topic :: Software Development",
        "Topic :: Software Development :: Code Generators",
        "Topic :: Software Development :: Testing",
        "Natural Language :: English",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.7",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Programming Language :: Python :: 3.11",
    ],
)