make file:// conditional on depth

galaxyproject · Jul 18, 2023 · e531354 · e531354
1 parent 54578f6
commit e531354
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Showing 2 changed files with 4 additions and 1 deletion.
diff --git a/planemo/galaxy/config.py b/planemo/galaxy/config.py
@@ -1244,7 +1244,7 @@ def _install_galaxy_via_download(ctx, galaxy_root, env, kwds):
 def _install_galaxy_via_git(ctx, galaxy_root, env, kwds):
     gx_repo = _ensure_galaxy_repository_available(ctx, kwds)
     branch = _galaxy_branch(kwds)
-    command = git.command_clone(ctx, f"file://{gx_repo}", galaxy_root, branch=branch, depth=1)
+    command = git.command_clone(ctx, gx_repo", galaxy_root, branch=branch, depth=1)
     exit_code = shell(command, env=env)
     if exit_code != 0:
         raise Exception("Failed to clone Galaxy via git")

diff --git a/planemo/git.py b/planemo/git.py
@@ -2,6 +2,7 @@
 
 import os
 import subprocess
+import urllib
 from typing import (
     Dict,
     List,
@@ -100,6 +101,8 @@ def command_clone(
         cmd.extend(["--branch", branch])
     if depth is not None:
         cmd.extend(["--depth", str(depth)])
+        if urllib.parse.urlparse(src).scheme == "":
+            src = "file://{src}"
     cmd.extend([src, dest])
     return cmd