From 68d7365134604c45e161e96cc9e5dfb8ea83f5d0 Mon Sep 17 00:00:00 2001
From: M Bernt <m.bernt@ufz.de>
Date: Sun, 17 Dec 2023 18:30:25 +0100
Subject: [PATCH] use is_of_type instead of ext str comparison

---
 tools/cutadapt/cutadapt.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/cutadapt/cutadapt.xml b/tools/cutadapt/cutadapt.xml
index f15a36df2ef..bc5fe47f3bd 100644
--- a/tools/cutadapt/cutadapt.xml
+++ b/tools/cutadapt/cutadapt.xml
@@ -39,7 +39,7 @@
     #set read1 = re.sub('[^\w\-\s]', '_', str($library.input_1.element_identifier))
 #end if
 
-#if $input_1.ext.startswith("fastq"):
+#if $input_1.is_of_type("fastq"):
     #set ext = ".fq"
 #else
     #set ext = ".fa"