diff --git a/tools/pbtk/bam2fastx.xml b/tools/pbtk/bam2fastx.xml
index d9a12646c05..7a894848690 100644
--- a/tools/pbtk/bam2fastx.xml
+++ b/tools/pbtk/bam2fastx.xml
@@ -2,7 +2,7 @@
PacBio BAM to Fastx
3.1.1
- 0
+ 1
pbtk
@@ -18,9 +18,9 @@ pbindex input.bam &&
#end if
input.bam
--num-threads "\${GALAXY_SLOTS:-1}" &&
-#if $output_format == "fasta":
+#if $output_format == "fasta_gz":
mv output.fasta.gz '$output_fasta_gz'
-#elif $output_format == "fastq":
+#elif $output_format == "fastq_gz":
mv output.fastq.gz '$output_fastq_gz'
#end if
]]>
@@ -33,28 +33,28 @@ input.bam
- output_format == "fasta"
+ output_format == "fasta_gz"
- output_format == "fastq"
+ output_format == "fastq_gz"
-
-
-
-
+
+
-
+