Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Updating tools/medaka from version 1.4.4 to 2.0.0 #4296

Open
wants to merge 1 commit into
base: main
Choose a base branch
from

Conversation

planemo-autoupdate
Copy link
Contributor

Hello! This is an automated update of the following tool: tools/medaka. I created this PR because I think the tool's main dependency is out of date, i.e. there is a newer version available through conda.

I have updated tools/medaka from version 1.4.4 to 1.5.0.

Project home page: https://github.com/nanoporetech/medaka/releases

@simonbray
Copy link
Member

From the release notes:

Remove medaka_variant in deference of clair3.

No idea if wrapping this should be a priority: https://github.com/HKU-BAL/Clair3

Also, the documentation site is no longer accessible; I updated the links to point directly to the GitHub repo: https://nanoporetech.github.io/medaka/index.html

@planemo-autoupdate planemo-autoupdate changed the title Updating tools/medaka from version 1.4.4 to 1.5.0 Updating tools/medaka from version 1.4.4 to 1.6.0 Mar 14, 2022
@simonbray
Copy link
Member

in 1.6.0:

--qualities option for smolecule and stitch to output consensus fastq.

@planemo-autoupdate planemo-autoupdate changed the title Updating tools/medaka from version 1.4.4 to 1.6.0 Updating tools/medaka from version 1.4.4 to 1.6.1 Jun 27, 2022
@pvanheus
Copy link
Contributor

pvanheus commented Jul 9, 2022

From the release notes:

Remove medaka_variant in deference of clair3.

No idea if wrapping this should be a priority: https://github.com/HKU-BAL/Clair3

There's an open issue on clair3: #4299

@planemo-autoupdate planemo-autoupdate changed the title Updating tools/medaka from version 1.4.4 to 1.6.1 Updating tools/medaka from version 1.4.4 to 1.7.2 Sep 30, 2022
@planemo-autoupdate planemo-autoupdate changed the title Updating tools/medaka from version 1.4.4 to 1.7.2 Updating tools/medaka from version 1.4.4 to 1.8.0 May 29, 2023
@nsoranzo nsoranzo changed the title Updating tools/medaka from version 1.4.4 to 1.8.0 Updating tools/medaka from version 1.4.4 to 1.11.1 Nov 6, 2023
@gxydevbot gxydevbot changed the title Updating tools/medaka from version 1.4.4 to 1.11.1 Updating tools/medaka from version 1.4.4 to 1.11.2 Dec 4, 2023
@gxydevbot gxydevbot changed the title Updating tools/medaka from version 1.4.4 to 1.11.2 Updating tools/medaka from version 1.4.4 to 1.11.3 Dec 11, 2023
@gxydevbot gxydevbot changed the title Updating tools/medaka from version 1.4.4 to 1.11.3 Updating tools/medaka from version 1.4.4 to 2.0.0 Sep 26, 2024
@gxydevbot
Copy link
Collaborator

There are new updates, they have been integrated to the PR, check the file diff.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

5 participants