Add Spapros

[heylf]

FOR CONTRIBUTOR:

• I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
• License permits unrestricted use (educational + commercial)
• This PR adds a new tool or tool collection
• This PR updates an existing tool or tool collection
• This PR does something else (explain below)

[heylf]

There is a TODO in selection.xml, where I was unsure how to handle the GALAXY_SLOTS.

[bgruening]

Thanks @heylf! I just added some things to think about, not strictly necessary to implement. Let me know what you think.

[bgruening]

This looks great. But we need to find a better way for the image tests:

Output out_png:  different than expected, difference (using diff):
( /tmp/tmpjbdm8nerplot_confusion_matrix_test2.png v. /tmp/tmpqico90tkplot_confusion_matrix_test2.png )
Binary data detected, not displaying diff

Using the newer asserts will help here :)

[heylf]

Sorry, it seemed to me I was not supposed to touch the ci and pr yaml with this PR so I reverted.

[bgruening]

@kostrykin it still does not work. Even with a new planemo release.

[bgruening]

@heylf Output out_masked_dotplot_png: different than expected, difference (using diff):

Now you can remove the comparison to images, asserts are working

[kostrykin]

@kostrykin it still does not work. Even with a new planemo release.

I have no clue why the new planemo release didn't solve it, but maybe @bernt-matthias knows?
After all, it was his PR: galaxyproject/planemo#1471

[mvdbeek]

This is not valid and causing the tests to fail. If you add an assertion or a file to test against this should work. If that's the issue I would revert #6218 and check that that works as expected.

[bgruening]

Wow, what is that? Its now green, but this file looks wired.

[heylf]

you mean the empty value for some rows? thats how it suppose to be.

[bgruening]

Thanks @heylf