GTN-tutorials-for-neoantigen #10713
Workflow file for this run
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| name: "[CI] GTN Build Testing" | |
| concurrency: | |
| group: ci-${{ github.head_ref }} | |
| cancel-in-progress: true | |
| # https://docs.github.com/en/free-pro-team@latest/actions/reference/workflow-syntax-for-github-actions#example-using-a-list-of-events | |
| on: | |
| pull_request: | |
| types: [opened, reopened, synchronize, ready_for_review] | |
| jobs: | |
| build-site: | |
| runs-on: ubuntu-latest | |
| if: github.event_name != 'pull_request' || !github.event.pull_request.draft | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| persist-credentials: false | |
| # BEGIN Dependencies | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| architecture: 'x64' | |
| - uses: ruby/setup-ruby@v1 | |
| with: | |
| ruby-version: "3.2" | |
| - uses: actions/cache@v4 | |
| with: | |
| path: | | |
| vendor/bundle | |
| key: ${{ runner.os }}-gems-${{ hashFiles('**/Gemfile.lock') }}- | |
| restore-keys: | | |
| ${{ runner.os }}-gems- | |
| - name: Install dependencies | |
| run: | | |
| gem install bundler | |
| bundle config path vendor/bundle | |
| bundle install --jobs 4 --retry 3 | |
| bundle pristine ffi | |
| # END Dependencies | |
| - name: Ensure that the site builds | |
| run: bundle exec jekyll build --strict_front_matter -d _site/training-material --trace --future | |
| - name: Validate all links, enforce alt text | |
| run: | | |
| bundle exec htmlproofer \ | |
| --ignore-urls "/.*localhost.*/","/.*vimeo\.com.*/","/.*gitter\.im.*/","/.*drmaa\.org.*/","/.*slides.html#.*/,/#embedded_jbrowse/","/.*videos.*.mp4.png/","/krona_(all|multisample).html/","/workflows\/trs_import/" \ | |
| --ignore-files "/.*krona.*\.html/","/.*\/files\/.*/","/.*\/node_modules\/.*/","/\/tutorials\/.*\/docker\//","/.*content.html/","/.*recentrifuge.*\.html/" \ | |
| --swap-urls "github.com/galaxyproject/training-material/tree/main:github.com/${GITHUB_REPOSITORY}/tree/${GITHUB_HEAD_REF}" \ | |
| --disable-external=true \ | |
| --enforce-https=false \ | |
| ./_site | |
| - name: Ensure no unexpected encoded HTML in output, ask a GTN contributor for help with this one. | |
| run: | | |
| ! fgrep -R 'lt;blockquote' _site | |
| - name: Ensure no poorly rendered FAQs, generally this is fixed by removing whitespace/blank lines from the frontmatter | |
| run: | | |
| ! fgrep -R -A2 -B2 'box_type:' _site/ | |
| - name: Ensure no poorly indented code blocks | |
| run: | | |
| bundle exec ruby bin/check-indent.rb | |
| - name: Ensure no unexpected jekyll in output. If this fails, generally it means you should add a page.description to the front matter. | |
| run: | | |
| ! fgrep -R 'site.pages' _site | |
| - name: Validate notebooks (If this fails, ask @hexylena to look at your notebook) | |
| run: | | |
| find _site | grep ipynb | xargs bundle exec ruby bin/check-valid-notebook.rb | |
| - name: Check URL persistence | |
| run: | | |
| bash bin/check-url-persistence.sh |