From d25af4d428625c1ed486d3dfc2173215c8ba1b40 Mon Sep 17 00:00:00 2001 From: Subina Mehta Date: Thu, 14 Nov 2024 18:24:22 -0500 Subject: [PATCH] Update tutorial.md --- .../tutorials/neoantigen-4-peptide-verification/tutorial.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/topics/proteomics/tutorials/neoantigen-4-peptide-verification/tutorial.md b/topics/proteomics/tutorials/neoantigen-4-peptide-verification/tutorial.md index ce4e0209c985e..db10a5c62fe54 100644 --- a/topics/proteomics/tutorials/neoantigen-4-peptide-verification/tutorial.md +++ b/topics/proteomics/tutorials/neoantigen-4-peptide-verification/tutorial.md @@ -209,7 +209,7 @@ PepQuery2 is a tool used to validate novel peptides and proteins by searching ma ## Filtering Tabular Data with **Query Tabular** -Query Tabular is a tool used to query tabular datasets using SQL-like commands. In this step, the tool is used to filter and extract specific data from the results generated by PepQuery2 (specifically the psm_rank_txt dataset). The query provided selects specific columns (e.g., c1 and c4) from the table where a condition(e.g., c20 = 'Yes') is met. This allows the user to filter the peptide-spectrum matches (PSMs) based on certain criteria, such as identifying PSMs that were validated with a "Yes" condition. The tool helps organize the data into a more manageable and relevant format for further analysis. +Query Tabular is a tool used to query tabular datasets using SQL-like commands. In this step, the tool is used to filter and extract specific data from the results generated by PepQuery2 (specifically the psm_rank_txt dataset). The query provided selects specific columns from the table where a condition is met. This allows the user to filter the peptide-spectrum matches (PSMs) based on certain criteria, such as identifying PSMs that were validated with a "Yes" condition. The tool helps organize the data into a more manageable and relevant format for further analysis. > Query tabular > @@ -217,7 +217,8 @@ Query Tabular is a tool used to query tabular datasets using SQL-like commands. > - In *"Database Table"*: > - {% icon param-repeat %} *"Insert Database Table"* > - {% icon param-file %} *"Tabular Dataset for Table"*: `psm_rank_txt` (output of **PepQuery2** {% icon tool %}) -> - *"SQL Query to generate tabular output"*: `SELECT c1,c4 +> - *"SQL Query to generate tabular output"*: +`SELECT c1,c4 FROM t1 WHERE (c20 = 'Yes') `