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Incorrect chromosome naming in the ChIP-seq tutorial #5183

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pavanvidem opened this issue Jul 23, 2024 · 0 comments
Open

Incorrect chromosome naming in the ChIP-seq tutorial #5183

pavanvidem opened this issue Jul 23, 2024 · 0 comments
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pavanvidem commented Jul 23, 2024 •
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The tutorial has BAM/BED files with X instead of chrX. This apparently causes issues with visualizing on IGV (maybe older versions). Replacing X with chrX in all files should fix any issues with incompatibilities.

https://github.com/galaxyproject/training-material/tree/main/topics/epigenetics/tutorials/formation_of_super-structures_on_xi
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