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Fix output_bam_basename calculation#5

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multimeric wants to merge 5 commits intogatk-workflows:mastergatk-workflows/gatk3-data-processing:masterfrom multimeric:mastermultimeric/gatk3-data-processing:masterCopy head branch name to clipboard

+4-8

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Commits on Oct 18, 2018

• Made ref_alt optional as a workflow parameter

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  a5fa753

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Commits on Feb 19, 2019

• Merge branch 'master' of github.com:gatk-workflows/gatk3-data-processing

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  6edbea7

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• Use basename instead of sub()ing out the url prefix

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  ed26df5

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• Use an intermediate variable for the BAM basename

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  f94f069

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• Removed unused comment

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  055b852

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