DESCRIPTION

Package: GSwGBS
Type: Package
Title: Genomic Selection with Genotyping-by-Sequencing
Version: 1.0
Date: 2015-07-17
Author: Chris Gaynor, Jesse Poland, Trevor Rife, and Allan Fritz
Maintainer: Chris Gaynor <gaynor.robert@hotmail.com>
Description: Contains functions for performing genomic selection with genotyping-by-sequencing markers obtained using the de novo method described by Poland et al. (2012). Included is a function for running the GBS SNP calling pipeline using Tassel 4.0. Functions for converting SNPs to numerically coded markers and performing multiple genomic selections methods using those markers are also included. This package is still under development and may contain bugs, so use at your own risk. The first stable release will be version 1.0.
License: GPL-3
Depends: R (>= 3.0), rJava, foreach, doParallel
Suggests: rrBLUP, glmnet, pls, randomForest, missForest
SystemRequirements: Java (= 1.7)