Update gorules_test_errors.gaf

geneontology · Jul 27, 2023 · df5aea0 · df5aea0
1 parent cf26d4a
commit df5aea0
Showing 1 changed file with 6 additions and 4 deletions.
diff --git a/docs/gorules_test_errors.gaf b/docs/gorules_test_errors.gaf
@@ -1,6 +1,6 @@
-! gaf-version: 2.2
-! generated-by: GOC
-! date-generated: 2023-07-13
+!gaf-version: 2.2
+!generated-by: GOC
+!date-generated: 2023-07-27
 ! Dummy GAF file containing deliberate errors to test that GO rules are correctly implemented. 
 
 ! FAILS GORULE:0000001 - empty col1 and col2
@@ -41,6 +41,8 @@ GeneDB	PF3D7_0507500	SUB1	enables	GO:0004672	PMID:12764150	IEP		F	GORULE:0000006
 GeneDB	PF3D7_0507500	SUB1	enables	GO:0004672	PMID:12764150	HEP		F	GORULE:0000006-2 subtilisin-like	protease 1	gene	NCBITaxon:36329	20090624	GeneDB
 ! FAILS GORULE:0000006 - fails because uses IEP with a cellular component term.
 GeneDB	PF3D7_0507500	SUB1	enables	GO:0005634	PMID:12764150	IEP		C	GORULE:0000006-3 subtilisin-like	protease 1	gene	NCBITaxon:36329	20090624	GeneDB
+! FAILS GORULE:0000006 - passes because uses assigned_by is GOC, even if there is an IEP with a molecular function term.
+GeneDB	PF3D7_0507500	SUB1	enables	GO:0004672	PMID:12764150	IEP		F	GORULE:0000006-4 subtilisin-like	protease 1	gene	NCBITaxon:36329	20090624	GOC
 ! FAILS GORULE:0000007 IPI used with GO:0003824 catalytic activity or descendents (GO:0004674 protein serine/threonine kinase activity)
 UniProtKB	A0A078CGE6	M3KE1	enables	GO:0004674	PMID:11489177	IPI		F	GORULE:0000007-1		protein	taxon:3708	20150115	UniProt	
 ! FAILS GORULE:0000008 - GO:0005622 is in the subset gocheck_do_not_annotate
@@ -58,7 +60,7 @@ UniProtKB	O56786	hol187	is_active_in	GO:0005886	PMID:10419939	IDA		C	GORULE:0000
 ! FAILS GORULE:0000015 - "neutrophil chemotaxis" is not a child of "GO:0044419 interspecies interaction between organisms"
 UniProtKB	A0A0K2S4Q6	CD300H	involved_in	GO:0030593	PMID:26221034	IDA		P	GORULE:0000015-2 Protein CD300H	CD300H	protein	taxon:9606|taxon:55511	20160428	UniProt
 ! FAILS GORULE:0000015 - same taxon in Column 13 for  GO:0044158 host cell wall
-UniProtKB	O56786	hol187	is_active_in	GO:0018995	PMID:10419939	IDA		C	GORULE:0000015-3 Holin protein Hol187	hol187	protein	taxon:9696|taxon:9696	20170423	CACAO
+UniProtKB	O56786	hol187	is_active_in	GO:0018995	PMID:10419939	IDA		C	GORULE:0000015-3 Holin protein Hol187	hol187	protein	taxon:9606|taxon:9606	20170423	CACAO
 ! FAILS GORULE:0000016 -  column 8 (with/from) is null
 UniProtKB	Q9HC96	CAPN10	involved_in	GO:0006921	GO_REF:0000036	IC		P	GORULE:0000016-1 Calpain-10	CAPN10,KIAA1845	protein	taxon:9606	20140213	BHF-UCL	
 ! FAILS GORULE:0000017 - IDA annotations must not have a with/from entry (column 8)