Add assigned reads by STAR quantification to metadata fields of RNATables #315

	name: ReSDK CI

	on:
	push:
	branches:
	- master
	tags:
	- "[0-9]+.[0-9]+.[0-9]+*"

	pull_request:

	workflow_dispatch:

	jobs:
	test:
	runs-on: ubuntu-20.04
	strategy:
	fail-fast: false
	matrix:
	tox-env: [py37, py38, py39, py310, docs, linters, package]
	include:
	- tox-env: py37
	python-version: 3.7
	- tox-env: py38
	python-version: 3.8
	- tox-env: py39
	python-version: 3.9
	- tox-env: py310
	python-version: "3.10"
	- tox-env: linters
	python-version: 3.8
	- tox-env: package
	python-version: 3.8

	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install Dependencies
	run: \|
	python -m pip install --upgrade pip tox
	- name: Run Tests
	run: >
	tox -e ${{ matrix.tox-env }}
	- name: Upload coverage to Codecov
	if: matrix.tox-env == 'py37' \|\| matrix.tox-env == 'py38' \|\| matrix.tox-env == 'py39' \|\| matrix.tox-env == 'py310'
	uses: codecov/codecov-action@v1
	with:
	file: .coverage

	build:
	runs-on: ubuntu-20.04

	needs: test

	if: "startsWith(github.ref, 'refs/tags')"

	steps:
	- uses: actions/checkout@v1
	- name: Set up Python 3.8
	uses: actions/setup-python@v1
	with:
	python-version: 3.8
	- name: Install build
	run: python -m pip install --user build
	- name: Build a binary wheel and a source tarball
	run: python -m build --sdist --wheel --outdir dist/ .
	- name: Publish distribution to PyPI
	uses: pypa/gh-action-pypi-publish@master
	with:
	password: ${{ secrets.pypi_password }}

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