dev-python/snakemake: version bump 8.25.2 and enable tests

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
gentoo · Nov 11, 2024 · 1211ed7 · 1211ed7
1 parent c5b960d
commit 1211ed7
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diff --git a/dev-python/snakemake/Manifest b/dev-python/snakemake/Manifest
@@ -1,2 +1,2 @@
 DIST snakemake-7.32.4.gh.tar.gz 8885863 BLAKE2B 6bb7ff4722dd06f0edf5e8079b42f5e54d6f55f41e2987b7dae7f9b75df0d4d836138e28340e5977107a5cc0b5afe793b0d7897c501246cc1b4340eb4eca2f17 SHA512 34fef61528b18facab798652c88ed5c698ef02161e023255fdd024b7c7781c4e582cdb04b2740fdff9b6f3600acaec719742984acee57920bb48ef3b5af99d9a
-DIST snakemake-8.16.0.gh.tar.gz 8665306 BLAKE2B 76d3455ce9a7ccc749adb5a729ab954d7a3fd97dc2432c3a0e9aba1ace1cb08e377244a2a2527c676b9709f9bb8b5af29948c0385657755bbbc8449b136fc26d SHA512 29b6ba6da5dbbd347dee45114b949c976973555c9234f8a150dcd83e4af1638c1773590320bc44284cf20ea445efb377dcf9199921ed2b4d62bad3a60a41af3c
+DIST snakemake-8.25.2.gh.tar.gz 8691649 BLAKE2B 34b50676ed158988d9ccd3fe80096d34bb0cf0b10d8ff0bc82b6abf9f727e08ed5996589ecf6374e66064ab25f8b42f0561cebe9c922b0c9b76af8cad7f2271d SHA512 7ba67ee9dfc873c69a11b1db0c51426018cf09a998c64c939a324da79e0047c5afa9877ddac41edff46ef6630712ab8ffe5a175cbefbea7bcb9fd44cd85a61b3
diff --git a/dev-python/snakemake/snakemake-8.16.0.ebuild → dev-python/snakemake/snakemake-8.25.2.ebuild b/dev-python/snakemake/snakemake-8.16.0.ebuild → dev-python/snakemake/snakemake-8.25.2.ebuild
@@ -16,21 +16,6 @@ LICENSE="MIT"
 SLOT="0"
 KEYWORDS="~amd64"
 
-# cannot import name '_helpers' from 'google.cloud'
-RESTRICT="test"
-
-BDEPEND="
-	dev-python/tomli[${PYTHON_USEDEP}]
-	test? (
-		dev-python/requests-mock[${PYTHON_USEDEP}]
-		dev-python/google-api-python-client[${PYTHON_USEDEP}]
-		dev-python/networkx[${PYTHON_USEDEP}]
-		dev-python/pygments[${PYTHON_USEDEP}]
-		dev-python/pygraphviz[${PYTHON_USEDEP}]
-		net-libs/google-cloud-cpp
-	)
-"
-
 RDEPEND="
 	dev-python/appdirs[${PYTHON_USEDEP}]
 	dev-python/immutables[${PYTHON_USEDEP}]
@@ -50,13 +35,12 @@ RDEPEND="
 	dev-python/reretry[${PYTHON_USEDEP}]
 	>=dev-python/smart-open-4.0[${PYTHON_USEDEP}]
 	>=dev-python/snakemake-interface-common-1.17.0[${PYTHON_USEDEP}]
-	>=dev-python/snakemake-interface-executor-plugins-9.2.0[${PYTHON_USEDEP}]
+	>=dev-python/snakemake-interface-executor-plugins-9.3.2[${PYTHON_USEDEP}]
 	>=dev-python/snakemake-interface-storage-plugins-3.2.3[${PYTHON_USEDEP}]
-	>=dev-python/snakemake-interface-report-plugins-1.0.0[${PYTHON_USEDEP}]
+	>=dev-python/snakemake-interface-report-plugins-1.1.0[${PYTHON_USEDEP}]
 	dev-python/stopit[${PYTHON_USEDEP}]
 	dev-python/tabulate[${PYTHON_USEDEP}]
 	dev-python/throttler[${PYTHON_USEDEP}]
-	>=dev-python/toposort-1.10[${PYTHON_USEDEP}]
 	dev-python/wrapt[${PYTHON_USEDEP}]
 	>=dev-python/yte-1.5.1[${PYTHON_USEDEP}]
 	>=dev-python/dpath-2.1.6[${PYTHON_USEDEP}]
@@ -71,4 +55,17 @@ RDEPEND="
 # 	dev-python/docutils \
 # 	dev-python/recommonmark \
 # 	dev-python/myst-parser
+
+EPYTEST_IGNORE=(
+	# __file__ attribute does not match test name ('python_3_7')
+	tests/test_conda_python_3_7_script/test_script.py
+	# ModuleNotFoundError: No module named 'snakemake_executor_plugin_cluster_generic'
+	tests/test_executor_test_suite.py
+	# ImportError: cannot import name 'snakemake' from 'snakemake.script'
+	tests/test_script_py/scripts/test_explicit_import.py
+)
+EPYTEST_DESELECT=(
+	# No module named 'snakemake_storage_plugin_s3'
+	tests/test_api.py::test_deploy_sources
+)
 distutils_enable_tests pytest