From bff0db59d2e399d5567f5f8302d5ffc07668fd7d Mon Sep 17 00:00:00 2001 From: mschubertv Date: Mon, 18 Dec 2023 16:13:55 +0000 Subject: [PATCH] sci-biology/multiqc: add ebuild --- dev-python/colormath/Manifest | 1 + dev-python/colormath/colormath-3.0.0.ebuild | 21 ++++++++++ dev-python/colormath/metadata.xml | 12 ++++++ dev-python/lzstring/Manifest | 1 + dev-python/lzstring/lzstring-1.0.4.ebuild | 16 ++++++++ dev-python/lzstring/metadata.xml | 12 ++++++ dev-python/pyaml-env/Manifest | 1 + dev-python/pyaml-env/metadata.xml | 12 ++++++ dev-python/pyaml-env/pyaml-env-1.2.1.ebuild | 20 ++++++++++ dev-python/rich-click/Manifest | 1 + dev-python/rich-click/metadata.xml | 12 ++++++ dev-python/rich-click/rich-click-1.7.2.ebuild | 23 +++++++++++ dev-python/spectra/Manifest | 1 + dev-python/spectra/metadata.xml | 12 ++++++ dev-python/spectra/spectra-0.0.11.ebuild | 20 ++++++++++ sci-biology/multiqc/Manifest | 1 + sci-biology/multiqc/metadata.xml | 16 ++++++++ sci-biology/multiqc/multiqc-1.19.ebuild | 38 +++++++++++++++++++ 18 files changed, 220 insertions(+) create mode 100644 dev-python/colormath/Manifest create mode 100644 dev-python/colormath/colormath-3.0.0.ebuild create mode 100644 dev-python/colormath/metadata.xml create mode 100644 dev-python/lzstring/Manifest create mode 100644 dev-python/lzstring/lzstring-1.0.4.ebuild create mode 100644 dev-python/lzstring/metadata.xml create mode 100644 dev-python/pyaml-env/Manifest create mode 100644 dev-python/pyaml-env/metadata.xml create mode 100644 dev-python/pyaml-env/pyaml-env-1.2.1.ebuild create mode 100644 dev-python/rich-click/Manifest create mode 100644 dev-python/rich-click/metadata.xml create mode 100644 dev-python/rich-click/rich-click-1.7.2.ebuild create mode 100644 dev-python/spectra/Manifest create mode 100644 dev-python/spectra/metadata.xml create mode 100644 dev-python/spectra/spectra-0.0.11.ebuild create mode 100644 sci-biology/multiqc/Manifest create mode 100644 sci-biology/multiqc/metadata.xml create mode 100644 sci-biology/multiqc/multiqc-1.19.ebuild diff --git a/dev-python/colormath/Manifest b/dev-python/colormath/Manifest new file mode 100644 index 00000000000..82abf9e32a7 --- /dev/null +++ b/dev-python/colormath/Manifest @@ -0,0 +1 @@ +DIST colormath-3.0.0.tar.gz 39761 BLAKE2B 3c7cdd08336a3ab35618a79ad31717433c08b23d8ee4fc5484da7305395fce61fa442fc9ff979ff107808c56e809deca9d176677f17106651047be14edc27e9e SHA512 12d1ab931000dadb087fdf7e56280690ff51a299e976347026703eac83373edcacd3310255fd52e05d842aab54d4f7d3ed19deda8db4b78574a7273f1c8cc058 diff --git a/dev-python/colormath/colormath-3.0.0.ebuild b/dev-python/colormath/colormath-3.0.0.ebuild new file mode 100644 index 00000000000..2c728094d67 --- /dev/null +++ b/dev-python/colormath/colormath-3.0.0.ebuild @@ -0,0 +1,21 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..12} ) + +inherit pypi distutils-r1 + +DESCRIPTION="Easy color scales and color conversion for Python" +HOMEPAGE="https://pypi.org/project/colormath/" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +RDEPEND="dev-python/networkx[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}]" + +distutils_enable_tests nose diff --git a/dev-python/colormath/metadata.xml b/dev-python/colormath/metadata.xml new file mode 100644 index 00000000000..a633acfa0d5 --- /dev/null +++ b/dev-python/colormath/metadata.xml @@ -0,0 +1,12 @@ + + + + + mschu.dev@gmail.com + Michael Schubert + + + gtaylor/python-colormath + colormath + + diff --git a/dev-python/lzstring/Manifest b/dev-python/lzstring/Manifest new file mode 100644 index 00000000000..f44e5e7734f --- /dev/null +++ b/dev-python/lzstring/Manifest @@ -0,0 +1 @@ +DIST lzstring-1.0.4.tar.gz 4256 BLAKE2B e1a205f980de050635114e26a86d7251e0822a4459c44042291e80d55129d815f0753ff2b45a179fb468e9020a0a6255748566bc4e62fc98e7e041b07ae073f3 SHA512 0d61fe04402aaa5325d3ab555b9b83132048124a2ff11ae3a947a188d5507f1043b0522fcb7024009d75cf3efd3afbb64d24c238c4c2181346a823c77cb4ea02 diff --git a/dev-python/lzstring/lzstring-1.0.4.ebuild b/dev-python/lzstring/lzstring-1.0.4.ebuild new file mode 100644 index 00000000000..271a49f2683 --- /dev/null +++ b/dev-python/lzstring/lzstring-1.0.4.ebuild @@ -0,0 +1,16 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..11} ) + +inherit pypi distutils-r1 + +DESCRIPTION="String encoding/decoding of binary data" +HOMEPAGE="https://pypi.org/project/lzstring/" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" diff --git a/dev-python/lzstring/metadata.xml b/dev-python/lzstring/metadata.xml new file mode 100644 index 00000000000..4dde9fdd954 --- /dev/null +++ b/dev-python/lzstring/metadata.xml @@ -0,0 +1,12 @@ + + + + + mschu.dev@gmail.com + Michael Schubert + + + gkovacs/lz-string-python + lzstring + + diff --git a/dev-python/pyaml-env/Manifest b/dev-python/pyaml-env/Manifest new file mode 100644 index 00000000000..06b54d70e57 --- /dev/null +++ b/dev-python/pyaml-env/Manifest @@ -0,0 +1 @@ +DIST pyaml_env-1.2.1.tar.gz 12759 BLAKE2B 5a037ccefaaa3c60ce393dae5847777eb43745549a31b763ef2f50feb3a6e216ef793f9501df9e80cb381f78782e54b888ee4b043736dc05bcd01619d839ff86 SHA512 1ef873fa66660e4949dc1064260405244c8b3a2ee4391831a0a52be30e503e99d0b80b087c78db78683e9fe2fc1fd73f2e30c1eacc4c94a1394000d8526c9d68 diff --git a/dev-python/pyaml-env/metadata.xml b/dev-python/pyaml-env/metadata.xml new file mode 100644 index 00000000000..44769bf2375 --- /dev/null +++ b/dev-python/pyaml-env/metadata.xml @@ -0,0 +1,12 @@ + + + + + mschu.dev@gmail.com + Michael Schubert + + + mkaranasou/pyaml_env + pyaml-env + + diff --git a/dev-python/pyaml-env/pyaml-env-1.2.1.ebuild b/dev-python/pyaml-env/pyaml-env-1.2.1.ebuild new file mode 100644 index 00000000000..92b3eaa2fc9 --- /dev/null +++ b/dev-python/pyaml-env/pyaml-env-1.2.1.ebuild @@ -0,0 +1,20 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{8..12} ) + +inherit pypi distutils-r1 + +DESCRIPTION="Parse YAML configuration with environment variables in Python" +HOMEPAGE="https://pypi.org/project/pyaml-env/" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +RDEPEND="dev-python/pyyaml[${PYTHON_USEDEP}]" + +distutils_enable_tests pytest diff --git a/dev-python/rich-click/Manifest b/dev-python/rich-click/Manifest new file mode 100644 index 00000000000..ae8d92c2f45 --- /dev/null +++ b/dev-python/rich-click/Manifest @@ -0,0 +1 @@ +DIST rich-click-1.7.2.tar.gz 39362 BLAKE2B c4ad70d449ce9ceb3d9bbbccf7c7d3cd43386c35061d60c6395ff7845f606558af36a7c465a3393484008ece244f8e684ca9d71cea14463f04cac21803108543 SHA512 f4046e54874c4f3cc4f77651fdeb1f888d9435ff282f54d320c16c7c42f57c48018c0159230e780684336d29edff6e654454b8940b5b8df5a19139d2219c671b diff --git a/dev-python/rich-click/metadata.xml b/dev-python/rich-click/metadata.xml new file mode 100644 index 00000000000..79a5238bd3d --- /dev/null +++ b/dev-python/rich-click/metadata.xml @@ -0,0 +1,12 @@ + + + + + mschu.dev@gmail.com + Michael Schubert + + + ewels/rich-click + rich-click + + diff --git a/dev-python/rich-click/rich-click-1.7.2.ebuild b/dev-python/rich-click/rich-click-1.7.2.ebuild new file mode 100644 index 00000000000..51e2076df0f --- /dev/null +++ b/dev-python/rich-click/rich-click-1.7.2.ebuild @@ -0,0 +1,23 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..12} ) + +PYPI_NO_NORMALIZE=1 +inherit pypi distutils-r1 + +DESCRIPTION="Format click help output nicely with rich" +HOMEPAGE="https://pypi.org/project/rich-click/" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +RDEPEND="dev-python/click[${PYTHON_USEDEP}] + dev-python/rich[${PYTHON_USEDEP}] + dev-python/typing-extensions[${PYTHON_USEDEP}]" + +distutils_enable_tests pytest diff --git a/dev-python/spectra/Manifest b/dev-python/spectra/Manifest new file mode 100644 index 00000000000..97bcfc93a6d --- /dev/null +++ b/dev-python/spectra/Manifest @@ -0,0 +1 @@ +DIST spectra-0.0.11.tar.gz 18819 BLAKE2B 45ceefa8d2bab051a8fa8ee687f9fa25f6436e66987bb84c6982f64a522fb0b04120e068ef890f4b04f6626a130c5df1e81090913c143df1e82bda5ca3a01d4d SHA512 7b4e244ba200df8c6d7cff19ddf36a5af6cfe8cf6f89283f8dbb64345a3eb85b4f62456e3c75b7c8ce2d24e01c8a123a5763605b1e702903fe16839966e47b32 diff --git a/dev-python/spectra/metadata.xml b/dev-python/spectra/metadata.xml new file mode 100644 index 00000000000..9332eceeede --- /dev/null +++ b/dev-python/spectra/metadata.xml @@ -0,0 +1,12 @@ + + + + + mschu.dev@gmail.com + Michael Schubert + + + jsvine/spectra + spectra + + diff --git a/dev-python/spectra/spectra-0.0.11.ebuild b/dev-python/spectra/spectra-0.0.11.ebuild new file mode 100644 index 00000000000..77521f51518 --- /dev/null +++ b/dev-python/spectra/spectra-0.0.11.ebuild @@ -0,0 +1,20 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..12} ) + +inherit pypi distutils-r1 + +DESCRIPTION="Easy color scales and color conversion for Python" +HOMEPAGE="https://pypi.org/project/spectra/" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +RDEPEND="dev-python/colormath[${PYTHON_USEDEP}]" + +distutils_enable_tests pytest diff --git a/sci-biology/multiqc/Manifest b/sci-biology/multiqc/Manifest new file mode 100644 index 00000000000..3585038a307 --- /dev/null +++ b/sci-biology/multiqc/Manifest @@ -0,0 +1 @@ +DIST multiqc-1.19.tar.gz 1159781 BLAKE2B 32d592dba5675f8cb673c8fced9f8ed32977ecd2baf1407aff4ef16b88d8bdad6a9541748717b90d5ab755f6354166e2de62cb1abd282d0e5ce9d1c89529d249 SHA512 75ef5a1b6c6433d68b878e2a1d51b6f420b8c77831cb1279a0b87aff5d6dee7a65bcca5d1f4deb04d4957feef0f27a1155198e244bd165404b08a23bfc8a9354 diff --git a/sci-biology/multiqc/metadata.xml b/sci-biology/multiqc/metadata.xml new file mode 100644 index 00000000000..4f98f3c8812 --- /dev/null +++ b/sci-biology/multiqc/metadata.xml @@ -0,0 +1,16 @@ + + + + + mschu.dev@gmail.com + Michael Schubert + + + sci-biology@gentoo.org + Gentoo Biology Project + + + ewels/MultiQC + multiqc + + diff --git a/sci-biology/multiqc/multiqc-1.19.ebuild b/sci-biology/multiqc/multiqc-1.19.ebuild new file mode 100644 index 00000000000..114636f43d7 --- /dev/null +++ b/sci-biology/multiqc/multiqc-1.19.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..11} ) + +inherit pypi distutils-r1 + +DESCRIPTION="Aggregate bioinformatics results across many samples into a single report" +HOMEPAGE="https://multiqc.info/" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +RDEPEND="dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/click[${PYTHON_USEDEP}] + dev-python/coloredlogs[${PYTHON_USEDEP}] + dev-python/future[${PYTHON_USEDEP}] + dev-python/jinja[${PYTHON_USEDEP}] + dev-python/lzstring[${PYTHON_USEDEP}] + dev-python/markdown[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + dev-python/pyyaml[${PYTHON_USEDEP}] + dev-python/requests[${PYTHON_USEDEP}] + dev-python/rich[${PYTHON_USEDEP}] + dev-python/rich-click[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + dev-python/spectra[${PYTHON_USEDEP}] + dev-python/importlib-metadata[$PYTHON_USEDEP] + dev-python/humanize[$PYTHON_USEDEP] + dev-python/pyaml-env[$PYTHON_USEDEP]" + +distutils_enable_tests pytest