dev-python/bedtools: move from sci-biology, version bump 0.10.0

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
gentoo · Jul 19, 2024 · e627b9f · e627b9f
1 parent 8968a28
commit e627b9f
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Showing 6 changed files with 8 additions and 50 deletions.
diff --git a/dev-python/pybedtools/Manifest b/dev-python/pybedtools/Manifest
@@ -0,0 +1 @@
+DIST pybedtools-0.10.0.tar.gz 12497095 BLAKE2B d9fb44bd3afcb8748e0cadbe0c4d55c7325911331d0719b79bd04eff264bd6299d407dee7f511bc05a7e12dd46e92a9c25ce0607b8926e6542e4dd652cc9d23f SHA512 cec04464fcfaa12bb660f223d6f656a30ac5822ea9053455dbc5717d2afbc998db9fd4b7424d8458445450a6ce5aafb65463fa1274b2691b26bfda7fe84bef56
diff --git a/sci-biology/pybedtools/metadata.xml → dev-python/pybedtools/metadata.xml b/sci-biology/pybedtools/metadata.xml → dev-python/pybedtools/metadata.xml
diff --git a/...iology/pybedtools/pybedtools-0.8.2.ebuild → ...ython/pybedtools/pybedtools-0.10.0.ebuild b/...iology/pybedtools/pybedtools-0.8.2.ebuild → ...ython/pybedtools/pybedtools-0.10.0.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 DISTUTILS_USE_PEP517=setuptools
-
+DISTUTILS_EXT=1
 inherit distutils-r1
 
 DESCRIPTION="Use BED and GFF files from python using BEDtools"
@@ -24,8 +24,9 @@ RDEPEND="
 	dev-python/pandas[${PYTHON_USEDEP}]
 	dev-python/matplotlib[${PYTHON_USEDEP}]
 "
-
-BDEPEND="dev-python/cython[${PYTHON_USEDEP}]"
+DEPEND="
+	dev-python/cython[${PYTHON_USEDEP}]
+"
 
 # TODO: fix docs building
 # ModuleNotFoundError: No module named 'pybedtools.cbedtools'

diff --git a/profiles/updates/2Q-2024 b/profiles/updates/2Q-2024
@@ -1 +1,2 @@
 move sci-biology/pyfaidx dev-python/pyfaidx
+move sci-biology/pybedtools dev-python/pybedtools
diff --git a/sci-biology/pybedtools/Manifest b/sci-biology/pybedtools/Manifest
diff --git a/sci-biology/pybedtools/pybedtools-0.9.0.ebuild b/sci-biology/pybedtools/pybedtools-0.9.0.ebuild
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		@@ -0,0 +1 @@
		DIST pybedtools-0.10.0.tar.gz 12497095 BLAKE2B d9fb44bd3afcb8748e0cadbe0c4d55c7325911331d0719b79bd04eff264bd6299d407dee7f511bc05a7e12dd46e92a9c25ce0607b8926e6542e4dd652cc9d23f SHA512 cec04464fcfaa12bb660f223d6f656a30ac5822ea9053455dbc5717d2afbc998db9fd4b7424d8458445450a6ce5aafb65463fa1274b2691b26bfda7fe84bef56
Original file line number	Diff line number	Diff line change
		@@ -1 +1,2 @@
		move sci-biology/pyfaidx dev-python/pyfaidx
		move sci-biology/pybedtools dev-python/pybedtools