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mitoVGP_conda_env_ONT.yml
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mitoVGP_conda_env_ONT.yml
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name: mitoVGP_ONT
channels:
- defaults
- bioconda/label/cf201901
- biobuilds
- yuxiang
- conda-forge
- bioconda
- ehmoussi
dependencies:
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.1=anacondar_1
- _tflow_select=2.3.0=mkl
- absl-py=0.8.1=py36_0
- asn1crypto=1.2.0=py36_0
- astor=0.7.1=py_0
- awscli=1.16.299=py36_0
- bam2fastq=1.1.0=0
- bcftools=1.9=h68d8f2e_9
- binutils_impl_linux-64=2.33.1=he1b5a44_7
- binutils_linux-64=2.33.1=h9595d00_15
- biopython=1.74=py36h516909a_0
- blas=2.14=openblas
- blast=2.9.0=h20b68b9_1
- boost=1.68.0=py36h8619c78_1001
- boost-cpp=1.68.0=h11c811c_1000
- botocore=1.13.35=py_0
- bowtie2=2.3.5=py36he860b03_0
- bwidget=1.9.14=0
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.15.0=h516909a_1001
- ca-certificates=2019.11.27=0
- cairo=1.14.12=h8948797_3
- certifi=2019.11.28=py36_0
- cffi=1.13.2=py36h2e261b9_0
- chardet=3.0.4=py36_1003
- colorama=0.4.1=py36_0
- cryptography=2.8=py36h1ba5d50_0
- curl=7.65.3=hf8cf82a_0
- cython=0.29.14=py36he6710b0_0
- decorator=4.4.1=py_0
- docutils=0.15.2=py36_0
- enum34=1.1.6=py36_1002
- fontconfig=2.13.0=h9420a91_0
- freebayes=1.2.0=py36h82df9c4_3
- freetype=2.9.1=h8a8886c_1
- fribidi=1.0.5=h7b6447c_0
- gast=0.3.2=py_0
- gcc_impl_linux-64=7.3.0
- gcc_linux-64=7.3.0=h553295d_15
- gfortran_impl_linux-64=7.3.0=hdf63c60_2
- glib=2.63.1=h5a9c865_0
- gmp=6.1.2=hf484d3e_1000
- gnutls=3.6.5=hd3a4fd2_1002
- google-pasta=0.1.8=py_0
- grpcio=1.23.0=py36he9ae1f9_0
- gsl=2.5=h294904e_1
- h5py=2.7.1=py36_2
- hdf5=1.10.1=2
- htslib=1.9=h244ad75_9
- icu=58.2=hf484d3e_1000
- idna=2.8=py36_1000
- infernal=1.1.2=h14c3975_2
- intervaltree=3.0.2=py_0
- jmespath=0.9.4=py_0
- keras-applications=1.0.8=py_1
- keras-preprocessing=1.1.0=py_0
- krb5=1.16.3=h05b26f9_1001
- ld_impl_linux-64=2.33.1=h53a641e_7
- libblas=3.8.0=14_openblas
- libcblas=3.8.0=14_openblas
- libcurl=7.65.3=hda55be3_0
- libdeflate=1.3=h516909a_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- libgcc-ng=9.2.0=hdf63c60_0
- libgfortran=3.0.0=1
- libgfortran-ng=7.3.0=hdf63c60_2
- liblapack=3.8.0=14_openblas
- liblapacke=3.8.0=14_openblas
- libopenblas=0.3.7=h5ec1e0e_5
- libpng=1.6.37=hbc83047_0
- libprotobuf=3.11.1=h8b12597_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.2.0=hdf63c60_0
- libuuid=1.0.3=h1bed415_2
- libxcb=1.13=h1bed415_1
- libxml2=2.9.9=hea5a465_1
- mappy=2.17=py36h84994c4_0
- markdown=3.1.1=py_0
- medaka=0.11.0=py36hbcae180_0
- minimap2=2.17=h8b12597_1
- mummer=3.23=pl526_8
- muscle=3.8.1551=h2d50403_3
- ncurses=6.1=hf484d3e_1002
- nettle=3.4.1=h1bed415_1002
- networkx=2.4=py_0
- numpy=1.16.1=py36h99e49ec_1
- numpy-base=1.16.1=py36h2f8d375_1
- ont-fast5-api=2.0.1=py_0
- openjdk=8.0.152=h46b5887_1
- openssl=1.1.1d=h7b6447c_3
- parallel=20160622=1
- parasail-python=1.1.19=py36h8b12597_0
- pcre=8.43=he1b5a44_0
- perl=5.26.2=h516909a_1006
- perl-archive-tar=2.32=pl526_0
- perl-carp=1.38=pl526_3
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.36=pl526_1
- perl-io-compress=2.087=pl526he1b5a44_0
- perl-io-zlib=1.10=pl526_2
- perl-json=4.02=pl526_0
- perl-json-xs=2.34=pl526h6bb024c_3
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-pathtools=3.75=pl526h14c3975_1
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-threaded=5.22.0=13
- perl-types-serialiser=1.0=pl526_2
- perl-xsloader=0.24=pl526_0
- picard=2.18.23=0
- pip=19.3.1=py36_0
- pixman=0.38.0=h7b6447c_0
- progressbar33=2.4=py_0
- protobuf=3.11.1=py36he1b5a44_0
- pyasn1=0.4.8=py_0
- pycparser=2.19=py36_1
- pyfaidx=0.5.6=py_0
- pyopenssl=19.1.0=py36_0
- pysam=0.15.3=py36hbcae180_3
- pysocks=1.7.1=py36_0
- python=3.6.7=h357f687_1006
- python-dateutil=2.8.0=py_0
- pyvcf=0.6.8=py36_1000
- pyyaml=5.1.2=py36h516909a_1
- racon=1.4.10=he513fc3_0
- readline=8.0=hf8c457e_0
- rsa=3.4.2=py_1
- s3transfer=0.2.1=py36_0
- samtools=1.9=h10a08f8_12
- scipy=1.3.2=py36h921218d_0
- setuptools=42.0.2=py36_0
- six=1.13.0=py36_0
- sortedcontainers=2.1.0=py_0
- sqlite=3.30.1=hcee41ef_0
- tbb=2019.9=hc9558a2_1
- tensorboard=1.14.0=py36_0
- tensorflow=1.14.0=mkl_py36h2526735_0
- tensorflow-base=1.14.0=mkl_py36h7ce6ba3_0
- tensorflow-estimator=1.14.0=py36h5ca1d4c_0
- termcolor=1.1.0=py_2
- tk=8.6.10=hed695b0_0
- trnascan-se=2.0=pl526h470a237_1
- urllib3=1.25.7=py36_0
- werkzeug=0.16.0=py_0
- whatshap=0.18=py36h6bb024c_0
- wheel=0.33.6=py36_0
- wrapt=1.11.2=py36h516909a_0
- xopen=0.8.4=py36_0
- xz=5.2.4=h14c3975_1001
- yaml=0.2.2=h516909a_1
- zlib=1.2.11=h516909a_1006