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gf777 committed Jan 31, 2021
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Expand Up @@ -79,131 +79,106 @@ An existing reference from closely to distantly related species is used to ident
VGP mitogenomes assembled using mitoVGP pipeline can be found on <a href="https://vgp.github.io/genomeark/">GenomeArk</a> and include:

<b>Pacbio</b><br/>
Hourglass Treefrog (<i>Dendropsophus ebraccatus</i>)<br/>
European common frog (<i>Rana temporaria</i>)<br/>
European Toad (<i>Bufo bufo</i>)<br/>
Two-lined caecilian (<i>Rhinatrema bivittatum</i>)<br/>
Gaboon caecilian (<i>Geotrypetes seraphini</i>)<br/>
Tiny Cayenne Caecilian (<i>Microcaecilia unicolor</i>)<br/>
Kakapo (<i>Strigops habroptilus</i>)<br/>
Gyrfalcon (<i>Falco rusticolus</i>)<br/>
Anna's hummingbird (<i>Calypte anna</i>)<br/>
Zebra Finch (male) (<i>Taeniopygia guttata</i>)<br/>
Barn swallow (<i>Hirundo rustica</i>)<br/>
Common Tern (<i>Sterna hirundo</i>)<br/>
Chicken (<i>Gallus gallus</i>)<br/>
Carmine Bee-eater (<i>Merops nubicus</i>)<br/>
Red-fronted tinkerbird (<i>Pogoniulus pusillus</i>)<br/>
Swainson's thrush (<i>Catharus ustulatus</i>)<br/>
New Caledonian crow (<i>Corvus moneduloides</i>)<br/>
Grey crowned-crane (<i>Balearica regulorum</i>)<br/>
Downy Woodpecker (<i>Dryobates pubescens</i>)<br/>
Budgerigar (<i>Melopsittacus undulatus</i>)<br/>
Rifleman (<i>Acanthisitta chloris</i>)<br/>
Common Cuckoo (<i>Cuculus canorus</i>)<br/>
Lesser kestrel (<i>Falco naumanni</i>)<br/>
Red-legged Seriema (<i>Cariama cristata</i>)<br/>
Yellow-throated Sandgrouse (<i>Pterocles gutturalis</i>)<br/>
Mute Swan (<i>Cygnus olor</i>)<br/>
Razorbill (<i>Alca torda</i>)<br/>
Common Yellowthroat (<i>Geothlypis trichas</i>)<br/>
Whiskered Treeswift (<i>Hemiprocne comata</i>)<br/>
Great Potoo (<i>Nyctibius grandis</i>)<br/>
Zebra Finch (female) (<i>Taeniopygia guttata</i>)<br/>
Eurasian Golden Plover (<i>Pluvialis apricaria</i>)<br/>
Maguari Stork (<i>Ciconia maguari</i>)<br/>
Tufted Duck (<i>Aythya fuligula</i>)<br/>
Abyssinian ground hornbill (<i>Bucorvus abyssinicus</i>)<br/>
Lanced-tailed manakin (<i>Chiroxiphia lanceolata</i>)<br/>
American Flamingo (<i>Phoenicopterus ruber</i>)<br/>
Eurasian blackcap (<i>Sylvia atricapilla</i>)<br/>
Garden Warbler (<i>Sylvia borin</i>)<br/>
Red-crested Turaco (<i>Tauraco erythrolophus</i>)<br/>
European golden eagle (<i>Aquila chrysaetos</i>)<br/>
European robin (<i>Erithacus rubecula</i>)<br/>
European turtle dove (<i>Streptopelia turtur</i>)<br/>
Common starfish (<i>Asterias rubens</i>)<br/>
Honeycomb rockfish (<i>Sebastes umbrosus</i>)<br/>
Largescale Four-Eyed Fish (<i>Anableps anableps</i>)<br/>
Needlefish (<i>Xenentodon cancila</i>)<br/>
Red-bellied piranha (<i>Pygocentrus nattereri</i>)<br/>
Flier cichlid (<i>Archocentrus centrarchus</i>)<br/>
Indo-pacific tarpon (<i>Megalops cyprinoides</i>)<br/>
Spotted scat (<i>Scatophagus argus</i>)<br/>
Northern pike (<i>Esox lucius</i>)<br/>
Warty Frogfish (<i>Antennarius maculatus</i>)<br/>
Boesman’s rainbowfish (<i>Melanotaenia boesemani</i>)<br/>
Zebrafish SAT strain (<i>Danio rerio</i>)<br/>
Electric eel (<i>Electrophorus electricus</i>)<br/>
Copperband butterflyfish (<i>Chelmon rostratus</i>)<br/>
European eel (<i>Anguilla anguilla</i>)<br/>
Peladilla (<i>Aplochiton taeniatus</i>)<br/>
Korean giant-fin mudskipper (<i>Periophthalmus magnuspinnatus</i>)<br/>
Lumpfish (<i>Cyclopterus lumpus</i>)<br/>
Spotty Wrasse (<i>Notolabrus celidotus</i>)<br/>
Atlantic Halibut (<i>Hippoglossus hippoglossus</i>)<br/>
Climbing perch (<i>Anabas testudineus</i>)<br/>
Brown trout (<i>Salmo trutta</i>)<br/>
Live sharksucker (<i>Echeneis naucrates</i>)<br/>
John dory (<i>Zeus faber</i>)<br/>
Sterlet (<i>Acipenser ruthenus</i>)<br/>
Japanese puffer (Torafugu) (<i>Takifugu rubripes</i>)<br/>
Tire track eel (<i>Mastacembelus armatus</i>)<br/>
Atlantic horse mackerel (<i>Trachurus trachurus</i>)<br/>
Blunt-snouted clingfish (<i>Gouania willdenowi</i>)<br/>
Denticle herring (<i>Denticeps clupeoides</i>)<br/>
Eastern happy (<i>Astatotilapia calliptera</i>)<br/>
Gilthead seabream (<i>Sparus aurata</i>)<br/>
Indian glassy fish (<i>Parambassis ranga</i>)<br/>
Reedfish (<i>Erpetoichthys calabaricus</i>)<br/>
Greater pipefish (<i>Syngnathus acus</i>)<br/>
Milkfish (<i>Chanos chanos</i>)<br/>
Channel bull blenny (<i>Cottoperca gobio</i>)<br/>
Atlantic cod (<i>Gadus morhua</i>)<br/>
Stoplight loosejaw (<i>Malacosteus niger</i>)<br/>
Pinecone soldierfish (<i>Myripristis murdjan</i>)<br/>
Jewelled blenny (<i>Salarias fasciatus</i>)<br/>
Golden arowana (<i>Scleropages formosus</i>)<br/>
Orbiculate cardinalfish (<i>Sphaeramia orbicularis</i>)<br/>
Prehistoric monster fish (<i>Thalassophryne amazonica</i>)<br/>
Sea Lamprey (<i>Petromyzon marinus</i>)<br/>
Platypus (<i>Ornithorhynchus anatinus</i>)<br/>
Cow (Angus/Braham Hybrid) (<i>Bos taurus</i>)<br/>
Chimpanzee (<i>Pan troglodytes</i>)<br/>
Short-beaked echidna (<i>Tachyglossus aculeatus</i>)<br/>
Blue Whale (<i>Balaenoptera musculus</i>)<br/>
Greater Mouse-Eared Bat (<i>Myotis myotis</i>)<br/>
Linnaeus's Two Toed Sloth (<i>Choloepus didactylus</i>)<br/>
Kuhl's Pipistrelle (<i>Pipistrellus kuhlii</i>)<br/>
Southern tamandua (<i>Tamandua tetradactyla</i>)<br/>
Greater Horseshoe Bat (<i>Rhinolophus ferrumequinum</i>)<br/>
Californian Sea Lion (<i>Zalophus californianus</i>)<br/>
Stoat (<i>Mustela erminea</i>)<br/>
Common brushtail possum (<i>Trichosurus vulpecula</i>)<br/>
Nile rat (<i>Arvicanthis niloticus</i>)<br/>
Human (<i>Homo sapiens</i>)<br/>
Bottlenose dolphin (<i>Tursiops truncatus</i>)<br/>
Ring-tailed lemur (<i>Lemur catta</i>)<br/>
Canada Lynx (<i>Lynx canadensis</i>)<br/>
Vaquita (<i>Phocoena sinus</i>)<br/>
Common marmoset (<i>Callithrix jacchus</i>)<br/>
Pale spear-nosed Bat (<i>Phyllostomus discolor</i>)<br/>
Common pipistrelle (<i>Pipistrellus pipistrellus</i>)<br/>
Eurasian red squirrel (<i>Sciurus vulgaris</i>)<br/>
Brown rat (<i>Rattus norvegicus</i>)<br/>
Grey squirrel (<i>Sciurus carolinensis</i>)<br/>
Eurasian otter (<i>Lutra lutra</i>)<br/>
Water vole (<i>Arvicola amphibius</i>)<br/>
Green sea turtle (<i>Chelonia mydas</i>)<br/>
Sand lizard (<i>Lacerta agilis</i>)<br/>
Leatherback Sea Turtle (<i>Dermochelys coriacea</i>)<br/>
Goode's Thornscrub tortoise (<i>Gopherus evgoodei</i>)<br/>
Bolson tortoise (<i>Gopherus flavomarginatus</i>)<br/>
Western terrestrial garter snake (<i>Thamnophis elegans</i>)<br/>
Great white shark (<i>Carcharodon carcharias</i>)<br/>
Smalltooth sawfish (<i>Pristis pectinata</i>)<br/>
Thorny Skate (<i>Amblyraja radiata</i>)<br/>
Small-spotted catshark (<i>Scyliorhinus canicula</i>)<br/>
Anna's hummingbird (<i>Calypte anna</i>)<br/>
Atlantic Halibut (<i>Hippoglossus hippoglossus</i>)<br/>
Atlantic horse mackerel (<i>Trachurus trachurus</i>)<br/>
Blue Whale (<i>Balaenoptera musculus</i>)<br/>
Blunt-snouted clingfish (<i>Gouania willdenowi</i>)<br/>
Boesman’s rainbowfish (<i>Melanotaenia boesemani</i>)<br/>
Bolson tortoise (<i>Gopherus flavomarginatus</i>)<br/>
Bottlenose dolphin (<i>Tursiops truncatus</i>)<br/>
Brown rat (<i>Rattus norvegicus</i>)<br/>
Brown trout (<i>Salmo trutta</i>)<br/>
Budgerigar (<i>Melopsittacus undulatus</i>)<br/>
Californian Sea Lion (<i>Zalophus californianus</i>)<br/>
Canada Lynx (<i>Lynx canadensis</i>)<br/>
Carmine Bee-eater (<i>Merops nubicus</i>)<br/>
Chicken (<i>Gallus gallus</i>)<br/>
Chimpanzee (<i>Pan troglodytes</i>)<br/>
Climbing perch (<i>Anabas testudineus</i>)<br/>
Common brushtail possum (<i>Trichosurus vulpecula</i>)<br/>
Common Cuckoo (<i>Cuculus canorus</i>)<br/>
Common marmoset (<i>Callithrix jacchus</i>)<br/>
Common pipistrelle (<i>Pipistrellus pipistrellus</i>)<br/>
Common starfish (<i>Asterias rubens</i>)<br/>
Common Tern (<i>Sterna hirundo</i>)<br/>
Common Yellowthroat (<i>Geothlypis trichas</i>)<br/>
Copperband butterflyfish (<i>Chelmon rostratus</i>)<br/>
Cow (Angus/Braham Hybrid) (<i>Bos taurus</i>)<br/>
Denticle herring (<i>Denticeps clupeoides</i>)<br/>
Downy Woodpecker (<i>Dryobates pubescens</i>)<br/>
Eastern happy (<i>Astatotilapia calliptera</i>)<br/>
Electric eel (<i>Electrophorus electricus</i>)<br/>
Eurasian Golden Plover (<i>Pluvialis apricaria</i>)<br/>
Eurasian otter (<i>Lutra lutra</i>)<br/>
Eurasian red squirrel (<i>Sciurus vulgaris</i>)<br/>
European common frog (<i>Rana temporaria</i>)<br/>
European golden eagle (<i>Aquila chrysaetos</i>)<br/>
European Toad (<i>Bufo bufo</i>)<br/>
Flier cichlid (<i>Archocentrus centrarchus</i>)<br/>
Gaboon caecilian (<i>Geotrypetes seraphini</i>)<br/>
Gilthead seabream (<i>Sparus aurata</i>)<br/>
Goode's Thornscrub tortoise (<i>Gopherus evgoodei</i>)<br/>
Great Potoo (<i>Nyctibius grandis</i>)<br/>
Great white shark (<i>Carcharodon carcharias</i>)<br/>
Greater Horseshoe Bat (<i>Rhinolophus ferrumequinum</i>)<br/>
Greater Mouse-Eared Bat (<i>Myotis myotis</i>)<br/>
Greater pipefish (<i>Syngnathus acus</i>)<br/>
Grey crowned-crane (<i>Balearica regulorum</i>)<br/>
Grey squirrel (<i>Sciurus carolinensis</i>)<br/>
Gyrfalcon (<i>Falco rusticolus</i>)<br/>
Honeycomb rockfish (<i>Sebastes umbrosus</i>)<br/>
Hourglass Treefrog (<i>Dendropsophus ebraccatus</i>)<br/>
Human (<i>Homo sapiens</i>)<br/>
Indian glassy fish (<i>Parambassis ranga</i>)<br/>
Indo-pacific tarpon (<i>Megalops cyprinoides</i>)<br/>
Japanese puffer (Torafugu) (<i>Takifugu rubripes</i>)<br/>
John dory (<i>Zeus faber</i>)<br/>
Kakapo (<i>Strigops habroptilus</i>)<br/>
Korean giant-fin mudskipper (<i>Periophthalmus magnuspinnatus</i>)<br/>
Kuhl's Pipistrelle (<i>Pipistrellus kuhlii</i>)<br/>
Largescale Four-Eyed Fish (<i>Anableps anableps</i>)<br/>
Leatherback Sea Turtle (<i>Dermochelys coriacea</i>)<br/>
Lesser kestrel (<i>Falco naumanni</i>)<br/>
Linnaeus's Two Toed Sloth (<i>Choloepus didactylus</i>)<br/>
Live sharksucker (<i>Echeneis naucrates</i>)<br/>
Lumpfish (<i>Cyclopterus lumpus</i>)<br/>
Maguari Stork (<i>Ciconia maguari</i>)<br/>
Mute Swan (<i>Cygnus olor</i>)<br/>
Needlefish (<i>Xenentodon cancila</i>)<br/>
New Caledonian crow (<i>Corvus moneduloides</i>)<br/>
Nile rat (<i>Arvicanthis niloticus</i>)<br/>
Northern pike (<i>Esox lucius</i>)<br/>
Pale spear-nosed Bat (<i>Phyllostomus discolor</i>)<br/>
Platypus (<i>Ornithorhynchus anatinus</i>)<br/>
Razorbill (<i>Alca torda</i>)<br/>
Red-bellied piranha (<i>Pygocentrus nattereri</i>)<br/>
Red-fronted tinkerbird (<i>Pogoniulus pusillus</i>)<br/>
Red-legged Seriema (<i>Cariama cristata</i>)<br/>
Reedfish (<i>Erpetoichthys calabaricus</i>)<br/>
Rifleman (<i>Acanthisitta chloris</i>)<br/>
Ring-tailed lemur (<i>Lemur catta</i>)<br/>
Sand lizard (<i>Lacerta agilis</i>)<br/>
Sea Lamprey (<i>Petromyzon marinus</i>)<br/>
Short-beaked echidna (<i>Tachyglossus aculeatus</i>)<br/>
Smalltooth sawfish (<i>Pristis pectinata</i>)<br/>
Southern tamandua (<i>Tamandua tetradactyla</i>)<br/>
Spotted scat (<i>Scatophagus argus</i>)<br/>
Spotty Wrasse (<i>Notolabrus celidotus</i>)<br/>
Sterlet (<i>Acipenser ruthenus</i>)<br/>
Stoat (<i>Mustela erminea</i>)<br/>
Swainson's thrush (<i>Catharus ustulatus</i>)<br/>
Thorny Skate (<i>Amblyraja radiata</i>)<br/>
Tiny Cayenne Caecilian (<i>Microcaecilia unicolor</i>)<br/>
Tire track eel (<i>Mastacembelus armatus</i>)<br/>
Two-lined caecilian (<i>Rhinatrema bivittatum</i>)<br/>
Vaquita (<i>Phocoena sinus</i>)<br/>
Warty Frogfish (<i>Antennarius maculatus</i>)<br/>
Whiskered Treeswift (<i>Hemiprocne comata</i>)<br/>
Yellow-throated Sandgrouse (<i>Pterocles gutturalis</i>)<br/>
Zebra Finch (female) (<i>Taeniopygia guttata</i>)<br/>
Zebra Finch (male) (<i>Taeniopygia guttata</i>)<br/>
Zebrafish SAT strain (<i>Danio rerio</i>)<br/>

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