This project contains software to analyze the relationships between IES (or other developmentally excised DNA) retention scores across multiple experimental conditions. A retention score correlation matrix is the output.
For detailed usage information download and run after_ParTIES.py with the "--help" switch.
This software was tested with Python3.6 and relevant modules for scientific computing from the Anaconda software distribution from Continuum Analytics (version: Anaconda3-4.3.1). After cloning or downloading this repository, all the depencies can be installed using conda, with the following command: conda env create -f conda_env.yml