check-standard.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: [dev, main, master]
  pull_request:
    branches: [dev, main, master]

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macOS-latest,   r: 'release'}
          - {os: windows-latest, r: 'release'}
          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
          - {os: ubuntu-latest,   r: 'release'}
          - {os: ubuntu-latest,   r: 'oldrel-1'}

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes
      RSPM: ${{ matrix.config.rspm }}

    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          extra-repositories: 'https://inla.r-inla-download.org/R/testing'
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true

      - uses: r-lib/actions/setup-pandoc@v2
      
      - name: Add inla repo
        run: |
          cat('options(repos = c(INLA = "https://inla.r-inla-download.org/R/testing/", getOption("repos")))', file = "~/.Rprofile", append = TRUE)
        # cat("\noptions(tinytex.verbose = TRUE)\n", file = "~/.Rprofile", append = TRUE)
        shell: Rscript {0}

      - name: Double check repos
        run: |
          print(getOption("repos"))
        shell: Rscript {0}

#      - name: Install JAGS
#        run: |
#          sudo apt-get update -y
#          sudo apt-get install -y jags

      - name: Install jags (windows-latest)
        if: runner.os == 'Windows'
        run: |
          curl.exe -o wjags.exe --url https://deac-fra.dl.sourceforge.net/project/mcmc-jags/JAGS/4.x/Windows/JAGS-4.2.0-Rtools33.exe
          wjags.exe /S
          del wjags.exe
        shell: cmd

      - name: Install jags (macOS-latest)
        if: runner.os == 'macOS'
        run : brew install jags

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          dependencies: '"all"'
          extra-packages: |
             rcmdcheck
          
      - uses: r-lib/actions/check-r-package@v2
        with:
          upload-snapshots: true