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Robert J. Gifford edited this page Sep 9, 2024 · 24 revisions

Welcome to the Lentivirus-GLUE wiki!

Lentivirus-GLUE is a GLUE project developed to support comparative genomic and evolutionary analysis of lentiviruses (genus Lentivirus).

Lentivirus GLUE

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Docker Installation
  5. Native Installation
  6. Usage Overview

Lentivirus Core Project

  1. Overview
  2. Schema Extensions
  3. Core Project Data

SRLV Extension

  1. Background
  2. Project Data
  3. Genotyping Tools

EIAV Extension

  1. Background
  2. Project Data
  3. Genotyping Tools

Primate Extension

  1. Background
  2. Project Data

FIV Extension

  1. Background
  2. Project Data

Bovine Extension

  1. Background

ERV Extension

  1. Background
  2. Schema Extensions
  3. ERV Project Data

The GLUE Framework

User Guide

  1. Project Data Model
  2. Schema Extensions
  3. Modules
  4. Alignments
  5. Variations
  6. Scripting Layer
  7. Freemarker Templates

Command Reference

  1. Command Mode Reference
  2. Mode Non-Specific Commands
  3. Module Type Reference
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