Merge pull request #2 from gitter-lab/colab_notebooks

"Added notebooks that are colab accessible, they should both be runnable from within colab. "
gitter-lab · Aug 29, 2024 · c4dd1b3 · c4dd1b3
2 parents 45237bb + 508b300
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diff --git a/notebooks/README.md b/notebooks/README.md
@@ -7,4 +7,6 @@ This directory contains example notebooks that show how to use various aspects o
 | [generate_rosetta_dataset.ipynb](generate_rosetta_dataset.ipynb) | Generate a Rosetta pretraining dataset using molecular simulations data obtained from the [metl-sim](https://github.com/gitter-lab/metl-sim) repository. |
 | [train_test_split.ipynb](train_test_split.ipynb)                 | Create train, validation, and test splits for experimental datasets.                                                                                     |
 | [pretraining.ipynb](pretraining.ipynb)                           | Pretrain METL models with Rosetta data.                                                                                                                  |
-| [finetuning.ipynb](finetuning.ipynb)                             | Finetune METL models with experimental data.                                                                                                             |
+| [finetuning.ipynb](finetuning.ipynb)                             | Finetune METL models with experimental data.                                                                                                             |
+| [colab_finetuning.ipynb](colab_finetuning.ipynb)                 | Finetune METL models with experimental data on Colab.                                                                                                    |
+| [colab_predicting.ipynb](colab_predicting.ipynb)                 | Predict with METL models with on Colab.                                                                                                                  |