pub-2023-05-van_Stokkum_et_al

Energy transfer and trapping in photosystem I with and without chlorophyll-f

Ivo H.M. van Stokkum^1,*, Marc G. Müller², Jörn Weißenborn¹, Sebastian Weigand¹, Joris J. Snellenburg¹, Alfred R. Holzwarth^1,2

_{¹ Department of Physics and Astronomy and LaserLaB, Faculty of Science, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands
² Max-Planck-Institut für chemische Energiekonversion, D-45470 Mülheim a.d. Ruhr, Germany}

_{*Correspondence: i.h.m.van.stokkum@vu.nl}

Getting started with this pyglotaran and this repository

For more detailed instructions on setting up pyglotaran, and usage instructions, refer to the pyglotaran user manual online.

Repository Quick-Start

Ensure you have a working Python 3.10 (or later) installation, and use your preferred python package manager to install the following Python packages:

• pyglotaran (pip, conda)
• pyglotaran-extras (pip, conda)

_{At a minimum version 0.7.1 of both packages is required}

When using VS Code, additionally the ipykernel package is needed (but VS Code will prompt for this).

When using Jupyter Notebook in the browser, also install: jupyterlab (pip, conda) and then run jupyter lab to start a jupyter server.

Then use VS Code or Jupyter to open one of the .ipynb notebooks from one of the subfolders in this project.

License

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These licenses are provided in plain text as a convenience to the user as COPYING.LESSER (which expands on COPYING) and LICENSE-CC-BY respectively.

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