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Genome masking #179

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xbarvazx opened this issue Oct 7, 2021 · 0 comments
Open

Genome masking #179

xbarvazx opened this issue Oct 7, 2021 · 0 comments

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@xbarvazx
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xbarvazx commented Oct 7, 2021

Hi,

Is it possible to use jellyfish for masking, similar to bbduk (which is limited to 31mer)?
The idea is to find kmers that repeat more than once in the genome and mask them.
Or do you know of downstreem tools that can use jellyfish count output for masking?

Best,
Raz
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