ReadMe.rst

GoFigure2

1. Introduction

The prime goal of GoFigure2 is the automatic segmentation of nuclei and cell membranes and in temporally tracking them amidst cell division to create lineages.

2. Installation

2.1. From Package

2.2. From Sources

Please refer to

• http://sourceforge.net/apps/trac/gofigure2/wiki/DeveloperSetUp
• http://sourceforge.net/apps/trac/gofigure2/wiki/Compilation
• http://sourceforge.net/apps/trac/gofigure2/wiki/VideoSupport

2.2.1. Prerequites

User or developpers should first install the following libraries and softwares

• CMake (>=2.8.2) visit http://www.cmake.org
• Qt (>=4.5) visit http://www.qtsoftware.com
• MySQL (=5.1) visit http://www.mysql.com
• FFMPEG (optional Linux or Mac) visit visit http://www.ffmpeg.org
• VTK with Qt and MYSQL (>=5.6) visit http://www.vtk.org
• ITK (>=3.20) visit http://www.itk.org
• Boost (>=1.38) visit http://www.boost.org

2.2.2. Configuration

• On Linux and Mac:

Create a build directory (where GoFigure2 will be compiled)::

$ mkdir BUILD

Launch cmake::

$ cd BUILD $ ccmake path/to/source/directory

Build::

$ make -j8

Install::

# make install