Major updates
Minor updates
- PPV_heatmap() prints plot and outputs a DF and the plot
- shinyapp includes now panels to create materials for BC and stroke problems
Major updates
- New plot_cutoff()
- Shows healthy and sick distributions and shows FP, FN, TP and TN depending on a cutoff point
- New remove_layers_cutoff_plot() functions
- Get's rid of layers of a cutoff_plot: FP, FN, TP or TN
Minor updates
- Fix for CRAN change in docType
- Use linewidth instead of size
- Faster implementation of a step in min_possible_prevalence
Minor updates
- safely_show_image_Rmd() function to fail gracefully when URL not found in Rmd's
- Add and fix checks in process_variables()
- Add tests to cover corner cases and new checks
Major updates
- Refactored the way we calculate PPV and NPV
- Added new parameter to control type of y scale (one_out_of) # 33
- Added new parameter to control x axis (limits_Sensitivity and limits_Specificity)
- Added multiple checks to catch corner conditions
- Renamed lots of parameters to make things more coherent
Minor updates
- Avoid acronyms
- Add bold label to area overlay
- Get rid of extra character in legend
- Translate all elements in area overlay
- Changed palette for NPV plots
- Add tests for new parameters and checks
- Add extra info in area overlay
Minor update
- x axis labels should always be equally spaced #37
- Update tests to work with upcoming ggplot2 #42
- Add default parameters to avoid errors #43
- Fix LazyData NOTE
Clean up old comments, add more tests...
- 100% code coverage
- min_possible_prevalence() is now much more efficient
- Improvements to overlay = "line" en PPV_heatmap(), now using {ggforce} for labels
- Changed color palette for NPV
- Tweaked color palette for PPV
Corrected issues raised in CRAN revision
- Reduced title to less than 65 characters
- Do not capitalize things in the Description text
- Added references to Description explaining main concepts
- Replaced cat() with message()
- Added folder parameter to PPV_diagnostic_vs_screening() and PPV_heatmap() functions
Added tests
- Added tests for all main functions
- Added codecov
Global clean-up
- No more global environment vars
- PPV and NPV working
- Passes all CRAN checks
Some improvements to stability
- Overlay works better
- Shiny app working
Initial release, includes 3 functions:
- PPV_heatmap.R: Plot PPV heatmaps
- PPV_diagnostic_vs_screening.R: Plot PPV for a diagnostic and a screening group
- min_possible_prevalence.R: Show minimum possible prevalence given the test characteristics