Add PublicBenchmarkDataset & SecretDataset
#1573
Workflow file for this run
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| # This is a simple workflow to run unit tests and code coverage | |
| name: Build | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on push and PRs | |
| push: | |
| pull_request: | |
| branches: [ main ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| check-codeclimate-credentials: | |
| name: Check CodeClimate credentials | |
| runs-on: ubuntu-latest | |
| outputs: | |
| has_credentials: ${{ steps.setvar.outputs.has_credentials }} | |
| steps: | |
| - name: Check secrets | |
| id: setvar | |
| run: | | |
| if [[ "${{ secrets.CODECLIMATE_TEST_REPORTER_ID }}" != "" ]]; \ | |
| then | |
| echo "Credentials to access CodeClimate found" | |
| echo has_credentials="true" >> $GITHUB_OUTPUT | |
| else | |
| echo "Credentials to access CodeClimate not found" | |
| echo has_credentials="false" >> $GITHUB_OUTPUT | |
| fi | |
| build-icetray: | |
| name: Unit tests - IceTray | |
| needs: [ check-codeclimate-credentials ] | |
| runs-on: ubuntu-latest | |
| container: | |
| image: icecube/icetray:icetray-prod-v1.8.1-ubuntu20.04-X64 | |
| options: --user root | |
| steps: | |
| - name: install git | |
| run: | | |
| apt-get --yes install sudo | |
| sudo apt update --fix-missing --yes | |
| sudo apt upgrade --yes | |
| sudo apt-get install --yes git-all | |
| - name: Set environment variables | |
| run: | | |
| echo "PATH=/usr/local/icetray/bin:$PATH" >> $GITHUB_ENV | |
| echo "PYTHONPATH=/usr/local/icetray/lib:$PYTHONPATH" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=/usr/local/icetray/lib:/usr/local/icetray/cernroot/lib:/usr/local/icetray/lib/tools:$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| - uses: actions/checkout@v3 | |
| - name: Print available disk space before graphnet install | |
| run: df -h | |
| - name: Upgrade packages already installed on icecube/icetray | |
| run: | | |
| pip install --upgrade astropy # Installed version incompatible with numpy 1.23.0 [https://github.com/astropy/astropy/issues/12534] | |
| pip install --ignore-installed PyYAML # Distutils installed [https://github.com/pypa/pip/issues/5247] | |
| pip install --upgrade psutil # Original version from IceTray Environment incompatible | |
| - name: Install package | |
| uses: ./.github/actions/install | |
| with: | |
| editable: true | |
| - name: Run unit tests and generate coverage report | |
| run: | | |
| coverage run --source=graphnet -m pytest tests/ --ignore=tests/examples/04_training --ignore=tests/utilities | |
| coverage run -a --source=graphnet -m pytest tests/examples/04_training | |
| coverage run -a --source=graphnet -m pytest tests/utilities | |
| coverage xml -o coverage.xml | |
| - name: Work around permission issue | |
| run: | | |
| git config --global --add safe.directory /__w/graphnet/graphnet | |
| - name: Publish code coverage | |
| uses: paambaati/codeclimate-action@v3.0.0 | |
| if: needs.check-codeclimate-credentials.outputs.has_credentials == 'true' | |
| env: | |
| CC_TEST_REPORTER_ID: ${{ secrets.CODECLIMATE_TEST_REPORTER_ID }} | |
| with: | |
| coverageCommand: coverage report | |
| coverageLocations: coverage.xml:coverage.py | |
| build-matrix: | |
| name: Unit tests - Python versions | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9, '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Print available disk space before graphnet install | |
| run: df -h | |
| - name: Install package | |
| uses: ./.github/actions/install | |
| with: | |
| editable: true | |
| - name: Print available disk space after graphnet install | |
| run: df -h | |
| - name: Print packages in pip | |
| run: | | |
| pip show torch | |
| pip show torch-geometric | |
| pip show torch-cluster | |
| pip show torch-sparse | |
| pip show torch-scatter | |
| pip show numpy | |
| - name: Run unit tests and generate coverage report | |
| run: | | |
| set -o pipefail # To propagate exit code from pytest | |
| coverage run --source=graphnet -m pytest tests/ --ignore=tests/utilities --ignore=tests/data/ --ignore=tests/deployment/ --ignore=tests/examples/01_icetray/ | |
| coverage run -a --source=graphnet -m pytest tests/utilities | |
| coverage report -m | |
| - name: Print available disk space after unit tests | |
| run: df -h | |
| build-macos: | |
| name: Unit tests - macOS | |
| runs-on: macos-13 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: Install package | |
| uses: ./.github/actions/install | |
| with: | |
| editable: true | |
| hardware: "cpu" | |
| - name: Print packages in pip | |
| run: | | |
| pip show torch | |
| pip show torch-geometric | |
| pip show torch-cluster | |
| pip show torch-sparse | |
| pip show torch-scatter | |
| - name: Run unit tests and generate coverage report | |
| run: | | |
| set -o pipefail # To propagate exit code from pytest | |
| coverage run --source=graphnet -m pytest tests/ --ignore=tests/data/ --ignore=tests/deployment/ --ignore=tests/examples/ --ignore=tests/utilities | |
| coverage run -a --source=graphnet -m pytest tests/utilities | |
| coverage report -m | |
| docs: | |
| name: Documentation Compilation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install package | |
| uses: ./.github/actions/install | |
| - name: Build documentation | |
| run: | | |
| cd docs | |
| make clean | |
| sphinx-apidoc \ | |
| --module-first \ | |
| --separate \ | |
| --force \ | |
| -d 2 \ | |
| --templatedir=source/_templates/ \ | |
| -o source/api ../src/ | |
| sed -i "2s/.*/API/" source/api/graphnet.rst | |
| make html |