project.qmd

---
title: "Project"
---

## GRDI-AMR1

- 1.0. Deployment of WGS and Metagenomics Sequencing
  - 1.1. Deployment of whole genome sequencing
- 2.0. Development of in silico Tools
  - 2.1. Development of analytics for AMR WGS
  - 2.2. Development of analytics for AMR metagenomics
  - 2.3. Development of analytics for AMR transmission modelling
  - 2.4. Development of analytics for associating ARGs with mobile genetic elements
- 3.0. AMR Transmission Dynamics
  - 3.1. Genomic epidemiology and transmission modelling of AMR Salmonella through F3 (food, feed fertilizer) poultry production system
  - 3.2. Analysis of occurrence and transmission of beta-lactam ARGs
  - 3.3. AMR burden of Enterobacteriaceae in imported seafood and other food systems
  - 3.4. In vivo transmission
  - 3.5. Culture-independent analysis of ARGs for assessing horizontal transfer of AMR determinants
- 4.0. Mitigation
  - 4.1. Poultry
  - 4.2. Swine
  - 4.3. Beef
  - 4.4. Agroecosystems
- 5.0. Risk
  - 5.1. Development of the integrated assessment model (IAM)
  - 5.2. Risk assessment & risk science