CHANGES.md

0.3.3 (2019-07-24)

• upgrade dependencies in docker environment
• set up deployment via CI

0.3.2 (2019-04-05)

• bugfixes in cooler

0.3.1 (2019-01-03)

• bugfixes in cooler, fastqc task and apt.list

0.3.0 (2019-01-02)

A major update of the pipeline and the config syntax.

• Simplify and speed up the pipeline by merging several groups of processes.
• Greatly reduce the storage requirements down to ~2x of the fastq.gz size.
• Introduce custom pair filtering during binning.
• Make .mcools with custom resolutions.
• Speed up the .sra->.fastq.gz conversion.
• Rename multiple config options.
• Switch from pbgzip to native bgzip multithreading.
• Allow users to change the location of the temp files.
• Post the list of the packages inside the docker on github.

0.2.0 (2018-11-18)

• report mapq in .pairs

0.1.1 (2018-11-09)

• remove .sra files when downloading data from SRA.
• use process selectors in configs.

0.1.0 (2018-08-04)

• Distiller-env: switch to pairtools v0.2.0 and cooler v0.7.10.