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@aoumess aoumess released this 19 Oct 08:37
· 44 commits to master since this release
0.3.3-1
021f859
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Learn about vigilant mode.
  • BUG : Segment.SEQUENZA() : added imputation of NA values in L2R object that made copynumber::aspcf() unable to work (happened with microarrays for flagged probes, not WES).
  • BUG : Segment.SEQUENZA() : BAF filtering wasn't working properly, resulting in wrong BAF segmentation, for all microarrays.
  • BUG : CS.Process.Batch() : wrong variable name in header check.
  • CORR : OS.Process() : corrected wrong handling of sex.chr output was forced as c("X", "Y") instead of variable, default c("chrX", "chrY").
  • CORR : Segment.FACETS() Segment.SEQUENZA() : Added missing meta 'BAF.filter' in the object.
  • CORR : README.md : fixed few links to dependencies, corrected default regex.
  • MOD : Segment.* : Changed the structure of the profile PNG filename to "[samplename].SEG.[segmenter].png" (to ease the use of regex for further steps in batch mode).
  • MOD : ASCN.ff.Batch() Annotate.ff.Batch() : corrected the default regex.
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