refactor: Update pyproject.toml moving geopandas to global dependenci…

…es and scikit-image to optional

pyproject.toml

@@ -24,6 +24,7 @@ matplotlib = "^3.8.3"
 uuid = "^1.30"
 pandas = "^2.2.1"
 numpy = "^1.26.4"
+geopandas = "^1.0.1"
 
 torch = { version = "^2.2.2", optional = true }
 torchvision = { version = "^0.17.2", optional = true }
@@ -32,12 +33,11 @@ transformers = { version = "^4.38.2", optional = true }
 timm = { version = "^0.9.16", optional = true }
 scikit-learn = "^1.4.1.post1"
 huggingface-hub = { version = "^0.22.1", optional = true }
-umap-learn = { version = "^0.5.5" }
-cellpose = {version = "^3.0.7", optional = true}
-dask = {extras = ["dataframe"], version = "^2024.3.1", optional = true}
+umap-learn = { version = "^0.5.5", optional = true }
+cellpose = { version = "^3.0.7", optional = true }
+dask = { extras = ["dataframe"], version = "^2024.3.1", optional = true }
 ipywidgets = { version = "^8.1.2", optional = true }
-geopandas = {version = "^1.0.1", optional = true}
-scikit-image = "^0.24.0"
+scikit-image = { version ="^0.24.0", optional = true}
 
 [tool.poetry.group.dev.dependencies]
 black = "^22.8.0"
@@ -55,7 +55,7 @@ pytest-subtests = "^0.12.1"
 
 [tool.poetry.extras]
 emb = ["torch", "torchvision", "tqdm", "transformers", "timm", "scikit-learn", 
-"huggingface-hub", "umap-learn", "dask", "geopandas"]
+"huggingface-hub", "umap-learn", "dask", "scikit-image"]
 seg = ["torch",  "torchvision", "cellpose", "ipywidgets"]
 
 [build-system]