RuntimeError: Can't find MKL libraries

[WuShichao]

Hello, I use the docker version, but get this error, no MKL.

(pycbc-software) [pycbc@24f913201669 GW151226]$ ls
extract_independent_samples.sh gw151226_inference.ini run_pycbc_inference_gw151226.sh
(pycbc-software) [pycbc@24f913201669 GW151226]$ pwd
/home/pycbc/pycbc-inference-paper/run_files/GW151226
(pycbc-software) [pycbc@24f913201669 GW151226]$ bash run_pycbc_inference_gw151226.sh
1135136340
1135136356
1135136238
1135137262
/home/pycbc/pycbc-software/lib/python2.7/site-packages/h5py/init.py:36: FutureWarning: Conversion of the second argument of issubdtype from float to np.floating is deprecated. In future, it will be treated as np.float64 == np.dtype(float).type.
from ._conv import register_converters as _register_converters
2019-06-03 16:42:42,073 Using seed 12
Traceback (most recent call last):
File "/home/pycbc/pycbc-software/bin/pycbc_inference", line 4, in
import('pkg_resources').run_script('PyCBC==1.12.3', 'pycbc_inference')
File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/pkg_resources/init.py", line 654, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/pkg_resources/init.py", line 1434, in run_script
exec(code, namespace, namespace)
File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/PyCBC-1.12.3-py2.7-linux-x86_64.egg/EGG-INFO/scripts/pycbc_inference", line 195, in
ctx = scheme.from_cli(opts)
File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/PyCBC-1.12.3-py2.7-linux-x86_64.egg/pycbc/scheme.py", line 262, in from_cli
ctx = MKLScheme()
File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/PyCBC-1.12.3-py2.7-linux-x86_64.egg/pycbc/scheme.py", line 149, in init
raise RuntimeError("Can't find MKL libraries")
RuntimeError: Can't find MKL libraries
(pycbc-software) [pycbc@24f913201669 GW151226]$

[soumide1102]

Hi,
This says you don't have MKL libraries set up in your environment. Changing PROCESSING_SCHEME=mkl to PROCESSING_SCHEME=cpu in the run_pycbc_inference_gw151226.sh script should be the fix.