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poetry.lock
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# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
[[package]]
name = "addict"
version = "2.4.0"
description = "Addict is a dictionary whose items can be set using both attribute and item syntax."
optional = false
python-versions = "*"
files = [
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]
[[package]]
name = "adeft"
version = "0.12.3"
description = "Acromine based Disambiguation of Entities From Text"
optional = false
python-versions = ">=3.7"
files = [
{file = "adeft-0.12.3.tar.gz", hash = "sha256:3106eb30e5a655caf67db8433b265afa3f292e99bcdf76a720d0c180d2d4b8bb"},
]
[package.dependencies]
appdirs = "*"
boto3 = "*"
flask = "*"
nltk = "*"
scikit-learn = ">=1.0"
[package.extras]
test = ["pytest", "pytest-cov"]
[[package]]
name = "aniso8601"
version = "9.0.1"
description = "A library for parsing ISO 8601 strings."
optional = false
python-versions = "*"
files = [
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]
[package.extras]
dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"]
[[package]]
name = "annotated-types"
version = "0.7.0"
description = "Reusable constraint types to use with typing.Annotated"
optional = false
python-versions = ">=3.8"
files = [
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]
[[package]]
name = "appdirs"
version = "1.4.4"
description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
optional = false
python-versions = "*"
files = [
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[[package]]
name = "asttokens"
version = "2.4.1"
description = "Annotate AST trees with source code positions"
optional = false
python-versions = "*"
files = [
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[package.dependencies]
six = ">=1.12.0"
[package.extras]
astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"]
test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"]
[[package]]
name = "attrs"
version = "23.2.0"
description = "Classes Without Boilerplate"
optional = false
python-versions = ">=3.7"
files = [
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]
[package.extras]
cov = ["attrs[tests]", "coverage[toml] (>=5.3)"]
dev = ["attrs[tests]", "pre-commit"]
docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"]
tests = ["attrs[tests-no-zope]", "zope-interface"]
tests-mypy = ["mypy (>=1.6)", "pytest-mypy-plugins"]
tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist[psutil]"]
[[package]]
name = "bioregistry"
version = "0.11.10"
description = "Integrated registry of biological databases and nomenclatures"
optional = false
python-versions = ">=3.8"
files = [
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]
[package.dependencies]
click = "*"
curies = ">=0.7.0"
more-click = ">=0.1.2"
pydantic = "*"
pystow = ">=0.1.13"
requests = "*"
tqdm = "*"
[package.extras]
align = ["beautifulsoup4", "class-resolver", "defusedxml", "fairsharing-client (>=0.1.0)", "pandas", "pyyaml", "tabulate"]
charts = ["jinja2", "matplotlib", "matplotlib-venn", "pandas", "seaborn"]
docs = ["autodoc-pydantic", "sphinx (<7.3)", "sphinx-automodapi", "sphinx-click", "sphinx-rtd-theme"]
export = ["ndex2", "pyyaml", "rdflib", "rdflib-jsonld"]
gha = ["more-itertools"]
health = ["click-default-group", "jinja2", "pandas", "pyyaml", "tabulate"]
tests = ["coverage", "httpx", "more-itertools", "pytest"]
web = ["bootstrap-flask (<=2.0.0)", "curies[fastapi]", "fastapi", "flask (<2.2.4)", "markdown", "pyyaml", "rdflib", "rdflib-endpoint", "rdflib-jsonld", "uvicorn", "werkzeug (<2.3.0)"]
[[package]]
name = "blinker"
version = "1.8.2"
description = "Fast, simple object-to-object and broadcast signaling"
optional = false
python-versions = ">=3.8"
files = [
{file = "blinker-1.8.2-py3-none-any.whl", hash = "sha256:1779309f71bf239144b9399d06ae925637cf6634cf6bd131104184531bf67c01"},
{file = "blinker-1.8.2.tar.gz", hash = "sha256:8f77b09d3bf7c795e969e9486f39c2c5e9c39d4ee07424be2bc594ece9642d83"},
]
[[package]]
name = "boto3"
version = "1.34.151"
description = "The AWS SDK for Python"
optional = false
python-versions = ">=3.8"
files = [
{file = "boto3-1.34.151-py3-none-any.whl", hash = "sha256:35bc76faacf1667d3fbb66c1966acf2230ef26206557efc26d9d9d79337bef43"},
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[package.dependencies]
botocore = ">=1.34.151,<1.35.0"
jmespath = ">=0.7.1,<2.0.0"
s3transfer = ">=0.10.0,<0.11.0"
[package.extras]
crt = ["botocore[crt] (>=1.21.0,<2.0a0)"]
[[package]]
name = "botocore"
version = "1.34.151"
description = "Low-level, data-driven core of boto 3."
optional = false
python-versions = ">=3.8"
files = [
{file = "botocore-1.34.151-py3-none-any.whl", hash = "sha256:9018680d7d4a8060c26d127ceec5ab5b270879f423ea39b863d8a46f3e34c404"},
{file = "botocore-1.34.151.tar.gz", hash = "sha256:0d0968e427a94378f295b49d59170dad539938487ec948de3d030f06092ec6dc"},
]
[package.dependencies]
jmespath = ">=0.7.1,<2.0.0"
python-dateutil = ">=2.1,<3.0.0"
urllib3 = {version = ">=1.25.4,<2.2.0 || >2.2.0,<3", markers = "python_version >= \"3.10\""}
[package.extras]
crt = ["awscrt (==0.20.11)"]
[[package]]
name = "certifi"
version = "2024.7.4"
description = "Python package for providing Mozilla's CA Bundle."
optional = false
python-versions = ">=3.6"
files = [
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[[package]]
name = "charset-normalizer"
version = "3.3.2"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
optional = false
python-versions = ">=3.7.0"
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