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Bug: Error Fetching ClinVar Summaries #39

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berntpopp opened this issue Aug 22, 2024 · 0 comments
Open

Bug: Error Fetching ClinVar Summaries #39

berntpopp opened this issue Aug 22, 2024 · 0 comments
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@berntpopp
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Description:
During the pipeline execution for the NAA10 gene, there was a failure in fetching ClinVar summaries with an error message indicating "Expecting value: line 1 column 1 (char 0)."
Steps to Reproduce:

  • Run the command: `python -m Amissense.cli pipeline -g NAA10 -o out`.
    Observed Behavior:
  • The pipeline fails when fetching ClinVar summaries and logs an error message related to a network-related issue.
    Expected Behavior:
  • The pipeline should handle such network issues gracefully or retry fetching the summaries, preventing the process from failing.
@berntpopp berntpopp added the bug Something isn't working label Aug 22, 2024
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