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NEWS
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Changes in version 0.7-4 (2023-09-02)
* greport-package.r: change @aliases greport package-greport to greport-package
Changes in version 0.7-3 (2022-10-17)
* changed email address for maintainer
Changes in version 0.7-2 (2020-02-09)
* dReport: added exclude1 argument, default to TRUE (see Hmisc::ggplot.summaryP)
* Require Hmisc >= 4.0-0, rms >= 5.0-0
* accrualReport: changed target enrollment/randomization curves to thick grayscale lines
* nriskReport: added more plots when id is present but groups is not
* maskVal, maskDframe: new functions for masking variables for test reports
* accrualReport: added number sites randomizing, number subjects randomized per randomizing size, mean and median days to randomization from enrollment
* dReport help file: removed unused dots argument
Changes in version 0.7-1 (2016-04-08)
* dReport: added stable argument for suppressing backup tables
* startPlot: stopped suppressing arguments for spar that are not in par
* survReport: added opts argument, mylim argument
* survReport: reduced font size of ylab when long, added markevent argument
* accrualReport: added studynos argument
* greport.sty: attach ocg-p LaTeX package so that ocgtools no longer needs ocg, asymptote, acrotex
* greport.sty: added poptype=3 to use tiny tables and no actual pop-ups
* survReport: changed default markevent to TRUE
* dReport: passed continuous argument to summaryM
Changes in version 0.7-0 (2015-12-02)
* survReport: plot cumulative incidence estimates when left hand side of formula contains Surv objects for competing risks
* upFirst: removed function; added to Hmisc
Changes in version 0.6-0 (2015-08-30)
* accrualReport: put zoomed cumulative distribution on same graph as regular
* exReport: added option plotExRemain to suppress 2-panel dot chart, solved problem with collisions of labels on vertical cumulative exclusion plot
* NAMESPACE: import base functions used
* exReport: avoided collisions in vertical dot chart, excluded actually randomized subjects from exclusion frequencies
* exReport: fixed exclusion table so that even though exclusion counts for numerators exclude any randomized subjects, special conditions (indented) use all enrolled subjects in the denominator
Changes in version 0.5-3 (2015-04-20)
* putFig: add \clearpage after every appendix table
* exReport: fine-tuned vertical dot plot
* dReport: rotated strip labels
* Added new greport option nontx.col and use that in other functions, for non-treatment groups
* dReport: changed strip label font size
* dReport: run ggplot.summaryP output through colorFacet (new in Hmisc)
* upFirst: leave all words with > 1 upper case letter unchanged (for acronyms)
* accrualReport: changed denominator to randomized subjects for table corresponding to box plots of days to randomization
* all reporting functions: use upFirst(lower=TRUE) for captions
* appsection: new function
* sampleFrac: capped fraction at 1.0, issued warning if > 1 and assumes this indicates that analysis is to compare randomized with non-randomized subjects
* test.Rnw, report.Rnw: switch to using changepage style instead of chngpage
* Misc: use gsub instead of translate()
* survReport: added aehaz argument, fixed caption for when differences don't apply (no strata)
* startPlot: ignored non-par parameters in ...
* survReport: changed default y.n.risk to 0 (used if what='1-S')
* exReport: added short caption when using app
* survReport: added times argument
* nriskReport: changed any(duplicated()) to anyDuplicated()
Changes in version 0.5-2 (2014-11-21)
* accrualReport: axis.Date was not positioning axis labels containing only 4-digit years at Jan 1 so wrote customized axisDate function
* Better escaping of special characters
* dReport: handle special characters in table captions
* dReport: added append=TRUE in call to latex() for proportions
* exReport: added apptail argument for appendix table of IDs
* All functions: checked that panel and subpanel containing only legal LaTeX macro name characters (A-Z a-z -); . are auto-removed
Changes in version 0.5-1 (2014-04-15)
* survReport: changed to use npsurv instead of survfit.formula
* exReport: changed order of output so that analysis of randomized patients marked for exclusions appears last; use LaTeX chngpage package to allow detailed table to go into left margin so as to be centered on page
* exReport: added adjustwidth argument
* accrualReport: allowed enrollment target N to be omitted
* exReport: fine tuning
* nriskReport: new report to show number of subjects still being followed at each day
* Merge: added support for data.table
* nriskReport: added id() variable
* exReport: fixed bug when there is an exclusion with 0 frequency
* accrualReport: improved graphics formatting, added minrand argument
* accrualReport: added enrollmax argument, clarified notation
* exReport: added ignoreExcl, ignoreRand arguments
* all: added greportOption texwhere; default is 'gentex'; can specify texwhere='' to write non-appendix LaTeX code to console as for knitr
* dReport: for byx for discrete Y, sense when Y is binary and use Wilson interval instead of bootstrap; adjust SE using confidence interval if proportion is 0 or 1
* dReport: changed discreteness non-binary classification to use maximum number of unique values or Y instead of minimum
* add globalVariables call to nriskReport