python.yml

name: Python CI

on:
  push:
    branches: [ '*' ]
  pull_request:
    branches: [ '*' ]

env:
  ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION: true

jobs:
  ubuntu_14:
    name: pyslow5 Ubuntu_14
    runs-on: ubuntu-20.04
    container: ubuntu:14.04
    steps:
    - uses: actions/checkout@v2
    - name: install packages
      run: sudo apt-get update && sudo apt-get install -y zlib1g-dev python3-pip wget && wget --no-check-certificate https://bootstrap.pypa.io/pip/3.4/get-pip.py && python3 get-pip.py && pip3 install setuptools cython "numpy>=1.13.3,<1.15.0" --user
    - name: env
      run: lsb_release -a &&  ldd --version && gcc --version && g++ --version && python3 --version
    - name: build
      run: make pyslow5
    - name: test
      run: python3 -m unittest -v python/test.py
  ubuntu_16:
    name: pyslow5 Ubuntu 16
    runs-on: ubuntu-20.04
    container: ubuntu:16.04
    steps:
    - uses: actions/checkout@v2
    - name: install packages
      run: apt-get update && apt-get install -y lsb-release zlib1g-dev python3-pip python3-setuptools && pip3 install cython "numpy>=1.14.5,<1.19.0"
    - name: env
      run: lsb_release -a &&  ldd --version && gcc --version && g++ --version  && python3 --version
    - name: build
      run: make pyslow5
    - name: test
      run: python3 -m unittest -v python/test.py
  pyslow5_ubuntu_18:
    name: pyslow5 Ubuntu 18
    runs-on: ubuntu-20.04
    container: ubuntu:18.04
    steps:
    - uses: actions/checkout@v2
    - name: install packages
      run: apt-get update && apt-get install -y zlib1g-dev python3-pip && pip3 install setuptools cython numpy
    - name: build
      run: make pyslow5
    - name: test
      run: python3 -m unittest -v python/test.py
  ubuntu_20:
    name: pyslow5 Ubuntu 20
    runs-on: ubuntu-20.04
    steps:
    - uses: actions/checkout@v2
    - name: install packages
      run: sudo apt-get update && sudo apt-get install -y zlib1g-dev python3-pip && pip3 install setuptools cython numpy
    - name: build
      run: make pyslow5
    - name: test
      run: python3 -m unittest -v python/test.py
  ubuntu_22:
    name: pyslow5 Ubuntu 22
    runs-on: ubuntu-22.04
    steps:
    - uses: actions/checkout@v2
    - name: install packages
      run: sudo apt-get update && sudo apt-get install -y zlib1g-dev python3-pip && pip3 install setuptools cython numpy
    - name: build
      run: make pyslow5
    - name: test
      run: python3 -m unittest -v python/test.py
  ubuntu_24:
    name: pyslow5 Ubuntu 24
    runs-on: ubuntu-24.04
    steps:
    - uses: actions/checkout@v2
    - name: install packages
      run: sudo apt-get update && sudo apt-get install -y zlib1g-dev python3-pip && pip3 install --break-system-packages setuptools cython numpy
    - name: build
      run: make pyslow5
    - name: test
      run: python3 -m unittest -v python/test.py
  arm64:
    name: pyslow5 ubuntu arm
    runs-on: ubuntu-latest
    steps:
    - run: docker run --rm --privileged multiarch/qemu-user-static:register --reset
    - uses: docker://multiarch/ubuntu-core:arm64-bionic
      with:
        args: 'uname -a'
    - uses: actions/checkout@v1
    - uses: docker://multiarch/ubuntu-core:arm64-bionic
      with:
        args: >
          bash -c "apt-get update &&
          apt-get install -y zlib1g-dev gcc make python3 python3-pip python3-numpy &&
          pip3 install setuptools cython &&
          ldd --version && gcc --version && python3 --version &&
          make pyslow5 &&
          python3 -m unittest -v python/test.py"
  os_x_12:
    name: pyslow5 mac os 12
    runs-on: macos-12
    steps:
    - uses: actions/checkout@v2
    - name: install packages
      run: pip3 install numpy setuptools
    - name: build
      run: make pyslow5
    - name: test
      run: python3 -m unittest -v python/test.py
  os_x_13:
    name: pyslow5 mac os 13
    runs-on: macos-13
    steps:
    - uses: actions/checkout@v2
    - name: install packages
      run: pip3 install numpy setuptools
    - name: build
      run: make pyslow5
    - name: test
      run: python3 -m unittest -v python/test.py
  os_x_14:
    name: pyslow5 mac os 14
    runs-on: macos-14
    steps:
    - uses: actions/checkout@v2
    - name: install packages
      run: pip3 install numpy setuptools --break-system-packages
    - name: build
      run: make pyslow5
    - name: test
      run: python3 -m unittest -v python/test.py