Skip to content

Releases: helske/bssm

v.2.0.1.3

06 Jul 13:04
Compare
Choose a tag to compare

Forgot to create a release for 2.0.1, so this is it plus some additional changes based on the rOpenSci review which will be incorporated into the CRAN version 2.0.2 later. From the NEWS:

bssm 2.0.1.3

  • Switched to markdown NEWS with a plan to be more clear about the future
    changes in the package.
  • Added more details to the ?bssm help page.
  • Added more details to the ?bssm_prior help page.
  • Added option to extract only hyperparameters in as_draws method. Also
    fixed a but in as_draws which caused the it to ignore states argument.
  • Added a default plot method for the run_mcmc output.

bssm 2.0.1 (Release date: 2022-05-02)

  • Fixed weights to one in case of non-linear model with mcmc_type="approx".
  • Adjusted tolerance of some testthat tests to comply with CRAN's MKL checks.

CRAN version 2.0.0

02 Dec 18:27
Compare
Choose a tag to compare

Bump to version 2.0.0 due to large number of changes, some visible to user, while some are due to submission to rOpenSci review. From the NEWS file:

  • Added a progress bar for run_mcmc.
  • Added a fitted method for extraction of summary statistics of posterior
    predictive distribution p(y_t | y_1, ..., y_n) for t = 1, ..., n.
  • Rewrote the summary method completely, which now returns data.frame. This
    also resulted in some changes in order of the function arguments.
  • The output of predict method is now a data frame with column weight
    corresponding to the IS-weights in case of IS-MCMC. Previously resampling
    was done internally, but now this is left for the user if needed
    (i.e. for drawing state trajectories).
  • The asymptotic_var and iact functions are now exported to users, and they
    also contain alternative methods based on the posterior package.
  • New function estimate_ess can be used to compute effective sample size
    from weighted MCMC.
  • Added compatibility with the posterior package by defining as_draws
    method for converting run_mcmc output to draws_df object.
  • New function check_diagnostics for quick glance of ESS and Rhat values.
  • Large number of new tests, and improved documentation with added examples.
  • Large number of internal tweaks so that the package complies with
    goodpractices package and Ropensci statistical software standards.

CRAN release 1.1.7-1

20 Sep 20:24
Compare
Choose a tag to compare

New CRAN version with mostly internal tweaking and more examples:

bssm 1.1.7-1 (Release date: 2021-09-21)

  • Fixed an error in automatic tests due to lack of fixed RNG seed.

bssm 1.1.7 (Release date: 2021-09-20)

  • Added a function cpp_example_model which can be used to extract and
    compile some non-linear and SDE models used in the examples and vignettes.
  • Added as_draws method for run_mcmc output so samples can be analysed using
    the posterior package.
  • Added more examples.
  • Fixed a tolerance of one MCMC test to pass the test on OSX as well.
  • Fixed a bug in iterated extended Kalman smoothing which resulted incorrect
    estimates.

CRAN version 1.1.6

06 Sep 07:10
Compare
Choose a tag to compare

Added a large number of automatic tests which resulted in finding and fixing some bugs, most notably in the case of non-linear models and the predict method (See NEWS for details).

CRAN version 1.1.5

09 Jul 21:15
Compare
Choose a tag to compare

Small update, updated drownings data until 2019 and made few small internal argument checks.

CRAN version 1.1.4

09 Jul 12:48
Compare
Choose a tag to compare

CRAN version 1.1.4. Changes from NEWS file:

bssm 1.1.4 (Release date: 2021-04-13)

  • Better documentation for SV model, and changed the ordering of arguments to emphasise the recommended parameterization.
  • Fixed predict method for SV model.
  • Removed parallelization in one example which failed on Solaris for some unknown reason.

First release

10 May 11:29
Compare
Choose a tag to compare
First release Pre-release
Pre-release

First properly documented release after introducing the non-linear Gaussian models. Some features which were available before rebuilding are still missing, but main features should fully working.