From 709658f738016818bdf997d3fe2a22b89694657c Mon Sep 17 00:00:00 2001
From: Jouni Helske <jouni.helske@utu.fi>
Date: Sun, 22 Sep 2024 09:21:52 +0300
Subject: [PATCH] update NAMESPACE

---
 NAMESPACE          |  1 -
 man/logLik_nhmm.Rd | 11 +++--------
 2 files changed, 3 insertions(+), 9 deletions(-)

diff --git a/NAMESPACE b/NAMESPACE
index 37626e74..47cf9aed 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -97,7 +97,6 @@ importFrom(Rcpp,loadModule)
 importFrom(TraMineR,alphabet)
 importFrom(TraMineR,seqdef)
 importFrom(TraMineR,seqstatf)
-importFrom(abind,abind)
 importFrom(ggplot2,aes)
 importFrom(ggplot2,facet_wrap)
 importFrom(ggplot2,geom_line)
diff --git a/man/logLik_nhmm.Rd b/man/logLik_nhmm.Rd
index d93b3f2e..534b2737 100644
--- a/man/logLik_nhmm.Rd
+++ b/man/logLik_nhmm.Rd
@@ -5,9 +5,9 @@
 \alias{logLik.mnhmm}
 \title{Log-likelihood of a Non-homogeneous Hidden Markov Model}
 \usage{
-\method{logLik}{nhmm}(object, partials = FALSE, penalized = TRUE, ...)
+\method{logLik}{nhmm}(object, partials = FALSE, ...)
 
-\method{logLik}{mnhmm}(object, partials = FALSE, penalized = TRUE, ...)
+\method{logLik}{mnhmm}(object, partials = FALSE, ...)
 }
 \arguments{
 \item{object}{A hidden Markov model.}
@@ -16,15 +16,10 @@
 each sequence to the total log-likelihood. The default is \code{FALSE}, which
 returns the sum of all log-likelihood components.}
 
-\item{penalized}{if \code{TRUE} (the default), returns the final penalized
-log-likelihood value from the optimization. If \code{FALSE}, returns the standard
-log-likelihood of non-homogenous HMM. if \code{partials = TRUE}, this argument is
-set to \code{FALSE}.}
-
 \item{...}{Ignored.}
 }
 \value{
-(Penalized) log-likelihood of the hidden Markov model. This is an
+Log-likelihood of the hidden Markov model. This is an
 object of class \code{logLik} with attributes \code{nobs} and \code{df} inherited from the
 model object.
 }