MS Annika 3.0 Non-Cleavable Crosslink Search Results

This repository contains scripts used for the analysis and visualization of the results of the MS Annika 3.0 non-cleavable crosslink search.

The structure of this repository is as follows:

• CElegansFasta: Creation of the filtered C. elegans protein database
• CElegansFastaDecoy: Creation of the filtered C. elegans protein database which also accounts for decoy PSMs
• CElegansResults: Analysis of the results for the C. elegans crosslink search using the protein database from CElegansFasta
• CElegansResultsDecoy: Analysis of the results for the C. elegans crosslink search using the protein database from CElegansFastaDecoy
• CElegansPPIs: Protein-protein-interaction analysis of the C. elegans results including visualization with xiView
• Lenz: Analysis of the results from the crosslink search using the dataset by Lenz and co-workers (JPST000845)
• Peplib_Beveridge: Analysis of the results form the crosslink search using the dataset by Beveridge and co-workers (PXD014337)
• Peplib_Matzinger: Analysis of the results form the crosslink search using the dataset by Matzinger and co-workers (PXD029252)
• Xi_Annika_scripts: Miscellaneous scripts to aid in the processing of xi output files

For details please refer to the MS Annika 3.0 publication (wip)!

Contact

• micha.birklbauer@fh-hagenberg.at