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hpcbmtenvcreate-v2p3.sh
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#!/bin/bash
echo "startup azure delopment script..."
MyResourceGroup=tmcbmt01
Location=japaneast #southcentralus
VMPREFIX=tmcbmt01
VMSIZE=Standard_HB120rs_v2 #Standard_D2as_v4 #Standard_HC44rs, Standard_HB120rs_v3
PBSVMSIZE=Standard_D8as_v4
# ネットワーク設定
MyAvailabilitySet=${VMPREFIX}avset01
MyNetwork=${VMPREFIX}-vnet01
MySubNetwork=compute
MySubNetwork2=management # ログインノード用
ACCELERATEDNETWORKING="--accelerated-networking true" # もし問題がある場合にはNOで利用可能。コンピュートノードのみ対象 true/false
MyNetworkSecurityGroup=${VMPREFIX}-nsg
# MACアドレスを維持するためにNICを保存するかどうかの設定
STATICMAC=false #true or false
IMAGE="OpenLogic:CentOS-HPC:7_8:latest" #Azure URNフォーマット。OpenLogic:CentOS-HPC:8_1:latest
# ユーザ名: デフォルト azureuser
USERNAME=azureuser
# SSH公開鍵ファイルを指定：デフォルトではカレントディレクトリを利用する
SSHKEYFILE="./${VMPREFIX}.pub"
TAG=${VMPREFIX}=$(date "+%Y%m%d")
# 作成するコンピュートノード数
MAXVM=2
# 追加の永続ディスクが必要な場合、ディスクサイズ(GB)を記入する https://azure.microsoft.com/en-us/pricing/details/managed-disks/
PERMANENTDISK=0
PBSPERMANENTDISK=2048
### ログイン処理
# サブスクリプションが複数ある場合は指定しておく
#az account set -s <Subscription ID or name>
# サービスプリンシパルの利用も可能以下のパラメータとログイン処理(az login)を有効にすること
#azure_name="uuid"
#azure_password="uuid"
#azure_tenant="uuid"
#az login --service-principal --username ${azure_name} --password ${azure_password} --tenant ${azure_tenant} --output none
# デバックオプション
#DEBUG="parallel -v"
# コマンド名取得
CMDNAME=$(basename "$0")
# コマンドオプションエラー処理
if [ $# -eq 0 ]; then
echo "実行するには1,2,3個の引数が必要です。" 1>&2
echo "create,delete,start,stop,stop-all,stopvm #,stopvm #1 #2,startvm #1,list,remount,pingpong,addlogin,updatensg,privatenw,publicnw の引数を一つ指定する必要があります。" 1>&2
echo "0. updatensg コマンド: スクリプト実行ノードのグローバルIPを利用してセキュリティグループを設定します。" 1>&2
echo "1. create コマンド: コンピュートノードを作成します。" 1>&2
echo "2. addlogin コマンド: login, PBSノードを作成します。" 1>&2
echo "3. privatenw コマンド: コンピュートノード、PBSノードからグローバルIPアドレスを除きます" 1>&2
echo "その他のコマンド" 1>&2
echo " - stop: すべてのコンピュートノードを停止します。" 1>&2
echo " - stop-all: すべてのコンピュートノード＋PBSノード・ログインノードもすべて停止します。" 1>&2
echo " - stopvm <vm#>: コンピュートノードVM#のみを停止します。" 1>&2
echo " - stopvms <start vm#> <end vm#>: コンピュートノードVM# xからVM# yまで停止します。" 1>&2
echo " - startvm <vm#>: コンピュートノードVM#を起動します。" 1>&2
echo " - list: VMの状況・およびマウンド状態を表示します。" 1>&2
echo " - listip: IPアドレスアサインの状態を表示します。" 1>&2
echo " - pingpong: すべてのノード間でpingpongを取得します。ローカルファイル result に保存します。" 1>&2
echo " - remount: デフォルトで設定されているディレクトリの再マウントを実施します。" 1>&2
echo " - publicnw コマンド: コンピュートノード、PBSノードからグローバルIPアドレスを再度追加します。" 1>&2
echo " - delete: すべてのコンピュートノードを削除します。" 1>&2
echo " - delete-all: すべてのコンピュートノード、PBSノード、ログインノードを削除します。" 1>&2
echo " - deletevm <vm#>: 特定のコンピュートノード#のみを削除します。(PBSの設定削除などは未実装)" 1>&2
echo " - checkfiles: ローカルで利用するスクリプトを生成します。" 1>&2
echo " - ssh: 各VMにアクセスできます。 例：$CMDNAME ssh 1: コンピュートノード#1にSSHアクセスします。" 1>&2
exit 1
fi
# SSH鍵チェック。なければ作成
if [ ! -f "./${VMPREFIX}" ] || [ ! -f "./${VMPREFIX}.pub" ] ; then
ssh-keygen -f ./${VMPREFIX} -m pem -t rsa -N "" -b 4096
else
chmod 600 ./${VMPREFIX}
fi
# SSH秘密鍵ファイルのディレクトリ決定
tmpfile=$(stat ./${VMPREFIX} -c '%a')
case $tmpfile in
600 )
SSHKEYDIR="./${VMPREFIX}"
;;
* )
cp ./${VMPREFIX} "$HOME"/.ssh/
chmod 600 "$HOME"/.ssh/${VMPREFIX}
SSHKEYDIR="$HOME/.ssh/${VMPREFIX}"
;;
esac
# github actions向けスペース
echo "SSHKEYDIR: $SSHKEYDIR"
# グローバルIPアドレスの取得・処理
curl -s https://ifconfig.io > tmpip #利用しているクライアントのグローバルIPアドレスを取得
curl -s https://ipinfo.io/ip >> tmpip #代替サイトでグローバルIPアドレスを取得
curl -s https://inet-ip.info >> tmpip #代替サイトでグローバルIPアドレスを取得
# 空行削除
sed -i -e '/^$/d' tmpip > /dev/null
LIMITEDIP="$(head -n 1 ./tmpip)/32"
rm ./tmpip
echo "current your client global ip address: $LIMITEDIP. This script defines the ristricted access from this client"
LIMITEDIP2=113.40.3.153/32 #追加制限IPアドレスをCIRDで記載 例：1.1.1.0/24
echo "addtional accessible CIDR: $LIMITEDIP2"
# 必要なパッケージ： GNU parallel, jq, curlのインストール。別途、azコマンドも必須
if [ -e /etc/debian_version ] || [ -e /etc/debian_release ]; then
# Check Ubuntu or Debian
if [ -e /etc/lsb-release ]; then
# Ubuntu
echo "your linux distribution is: ubuntu"
sudo apt-get install -qq -y parallel jq curl || apt-get install -qq -y parallel jq curl
else
# Debian
echo "your linux distribution is: debian"
sudo apt-get install -qq -y parallel jq curl || apt-get install -qq -y parallel jq curl
fi
elif [ -e /etc/fedora-release ]; then
# Fedra
echo "your linux distribution is: fedora"
sudo yum install --quiet -y parallel jq curl || yum install -y parallel jq curl
elif [ -e /etc/redhat-release ]; then
# RHEL or CentOS
echo "your linux distribution is: Redhat or CentOS"
sudo yum install --quiet -y parallel jq curl || yum install -y parallel jq curl
fi
case $1 in
create )
# クリーンナップファイル
if [ -f ./vmlist ]; then rm ./vmlist; fi
if [ -f ./ipaddresslist ]; then rm ./ipaddresslist; fi
### 全体環境作成
az group create --resource-group $MyResourceGroup --location $Location --tags "$TAG" --output none
# ネットワークチェック
tmpnetwork=$(az network vnet show -g $MyResourceGroup --name $MyNetwork --query id)
echo "current netowrk id: $tmpnetwork"
if [ -z "$tmpnetwork" ] ; then
az network vnet create -g $MyResourceGroup -n $MyNetwork --address-prefix 10.0.0.0/22 --subnet-name $MySubNetwork --subnet-prefix 10.0.0.0/24 --output none
fi
# NSGがあるかどうかチェック
checknsg=$(az network nsg show --name $MyNetworkSecurityGroup -g $MyResourceGroup --query name -o tsv)
if [ -z "$checknsg" ]; then
# 既存NSGがなければ作成
az network nsg create --name $MyNetworkSecurityGroup -g $MyResourceGroup -l $Location --tags "$TAG" --output none
az network nsg rule create --name ssh --nsg-name $MyNetworkSecurityGroup -g $MyResourceGroup --access allow --protocol Tcp --direction Inbound \
--priority 1000 --source-address-prefix "$LIMITEDIP" --source-port-range "*" --destination-address-prefix "*" --destination-port-range 22 --output none
az network nsg rule create --name ssh2 --nsg-name $MyNetworkSecurityGroup -g $MyResourceGroup --access allow --protocol Tcp --direction Inbound \
--priority 1010 --source-address-prefix $LIMITEDIP2 --source-port-range "*" --destination-address-prefix "*" --destination-port-range 22 --output none
else
# NSGがあれば、アップデート
az network nsg rule create --name ssh --nsg-name $MyNetworkSecurityGroup -g $MyResourceGroup --access allow --protocol Tcp --direction Inbound \
--priority 1000 --source-address-prefix "$LIMITEDIP" --source-port-range "*" --destination-address-prefix "*" --destination-port-range 22 --output none
az network nsg rule create --name ssh2 --nsg-name $MyNetworkSecurityGroup -g $MyResourceGroup --access allow --protocol Tcp --direction Inbound \
--priority 1010 --source-address-prefix $LIMITEDIP2 --source-port-range "*" --destination-address-prefix "*" --destination-port-range 22 --output none
fi
# 可用性セット作成。既存のものがあれば利用する
az vm availability-set create --name $MyAvailabilitySet -g $MyResourceGroup -l $Location --tags "$TAG" --output none
numvm=0
for count in $(seq 1 $MAXVM); do
# echo "creating nic # $count"
if [ ${STATICMAC} = "true" ]; then
az network nic create --name ${VMPREFIX}-${count}VMNic --resource-group $MyResourceGroup --vnet-name $MyNetwork --subnet $MySubNetwork --network-security --accelerated-networking true
echo "creating VM # ${count} with static nic"
# $ACCELERATEDNETWORKING: にはダブルクォーテーションはつけない
az vm create -g $MyResourceGroup -l $Location --name ${VMPREFIX}-${count} --size $VMSIZE --availability-set $MyAvailabilitySet --nics ${VMPREFIX}-${count}VMNic --image $IMAGE --admin-username $USERNAME --ssh-key-values $SSHKEYFILE --no-wait --tags "$TAG" -o none
fi
echo "creating VM # $count"
# $ACCELERATEDNETWORKING: にはダブルクォーテーションはつけない
az vm create \
--resource-group $MyResourceGroup --location $Location \
--name ${VMPREFIX}-"${count}" \
--size $VMSIZE --availability-set $MyAvailabilitySet \
--vnet-name $MyNetwork --subnet $MySubNetwork \
--nsg $MyNetworkSecurityGroup --nsg-rule SSH $ACCELERATEDNETWORKING \
--image $IMAGE \
--admin-username $USERNAME --ssh-key-values $SSHKEYFILE \
--no-wait --tags "$TAG" -o table
done
# IPアドレスが取得できるまで停止する
if [ $((MAXVM)) -ge 20 ]; then
echo "sleep 90" && sleep 90
else
echo "sleep 45" && sleep 45
fi
# vmlist 作成
echo "creating vmlist and ipaddresslist"
az vm list-ip-addresses -g $MyResourceGroup --query "[].virtualMachine[].{Name:name, PublicIp:network.publicIpAddresses[0].ipAddress}" -o tsv > tmpfile
# 自然番号順にソート
sort -V ./tmpfile > tmpfile2
echo "creating vmlist"
cut -f 1 ./tmpfile2 > vmlist
numvm=$(cat ./vmlist | wc -l)
# vmlist チェック
if [ $((numvm)) -ne $((MAXVM)) ]; then
# 規定より少なければ、再作成
az vm list-ip-addresses -g $MyResourceGroup --query "[].virtualMachine[].{Name:name, PublicIp:network.publicIpAddresses[0].ipAddress}" -o tsv > tmpfile
sort -V ./tmpfile > tmpfile2
cut -f 1 ./tmpfile2 > ./vmlist
fi
if [ $((numvm)) -ge $((MAXVM+2)) ]; then
# ログインノード、PBSノードの 2行削除する
sed -e '$d' ./vmlist
sed -e '$d' ./vmlist
fi
# ipaddresslist 作成
echo "careating IP Address list"
#az vm list-ip-addresses -g $MyResourceGroup --query "[].virtualMachine[].{Name:name, PublicIp:network.publicIpAddresses[0].ipAddress}" -o tsv > tmpfile
sort -V ./tmpfile > tmpfile2
cut -f 2 ./tmpfile2 > ipaddresslist
echo "ipaddresslist file contents"
cat ./ipaddresslist
# az vm list-ip-addresses --query を利用する場合、必要がない
# sed -i -e '/^$/d' ./ipaddresslist
numip=$(cat ./ipaddresslist | wc -l)
# ipaddresslist チェック
if [ $((numip)) -ne $((MAXVM)) ]; then
# 規定より少なければ、再作成
az vm list-ip-addresses --query "[].virtualMachine[].{Name:name, PublicIp:network.publicIpAddresses[0].ipAddress}" -o tsv -g $MyResourceGroup > tmpfile
sort -V ./tmpfile > tmpfile2
cut -f 2 ./tmpfile2 > ./ipaddresslist
fi
if [ $((numip)) -ge $((MAXVM+2)) ]; then
# ログインノード、PBSノードの 2行削除する
sed -e '$d' ./ipaddresslist
sed -e '$d' ./ipaddresslist
fi
# テンポラリファイル削除
rm ./tmpfile
rm ./tmpfile2
# 永続ディスクが必要な場合に設定可能
if [ $((PERMANENTDISK)) -gt 0 ]; then
az vm disk attach --new -g $MyResourceGroup --size-gb $PERMANENTDISK --sku Premium_LRS --vm-name ${VMPREFIX}-1 --name ${VMPREFIX}-1-disk0 -o table
fi
echo "setting up nfs server"
vm1ip=$(head -n 1 ./ipaddresslist)
for count in $(seq 1 20); do
checkssh=$(ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 5' -i "${SSHKEYDIR}" -t $USERNAME@"${vm1ip}" "uname")
if [ -n "$checkssh" ]; then
break
fi
echo "waiting sshd @ ${VMPREFIX}-1: sleep 10" && sleep 10
done
echo "checkssh connectiblity for ${VMPREFIX}-1: $checkssh"
if [ -z "$checkssh" ]; then
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript \
--scripts "sudo yum install --quiet -y nfs-utils epel-release && echo '/mnt/resource *(rw,no_root_squash,async)' >> /etc/exports"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "sudo yum install --quiet -y htop"
sleep 5
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "sudo chown ${USERNAME}:${USERNAME} /mnt/resource"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "sudo systemctl start rpcbind && sudo systemctl start nfs-server"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "sudo systemctl enable rpcbind && sudo systemctl enable nfs-server"
else
# SSH設定が高速
echo "${VMPREFIX}-1: sudo 設定"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "sudo cat /etc/sudoers | grep $USERNAME" > sudotmp
if [ -z "$sudotmp" ]; then
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "echo "$USERNAME ALL=NOPASSWD: ALL" | sudo tee -a /etc/sudoers"
fi
unset sudotmp && rm ./sudotmp
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "sudo cat /etc/sudoers | grep $USERNAME"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "sudo yum install --quiet -y nfs-utils epel-release"
# アフターインストール：epel-release
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "sudo yum install --quiet -y htop"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "echo '/mnt/resource *(rw,no_root_squash,async)' | sudo tee /etc/exports"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "sudo chown ${USERNAME}:${USERNAME} /mnt/resource"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "sudo systemctl start rpcbind && sudo systemctl start nfs-server"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "sudo systemctl enable rpcbind && sudo systemctl enable nfs-server"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "sudo showmount -e"
fi
echo "setting up nfs client"
mountip=$(az vm show -g $MyResourceGroup --name ${VMPREFIX}-1 -d --query privateIps -otsv)
echo "mountip: $mountip"
# 1行目を削除したIPアドレスリストを作成
sed '1d' ./ipaddresslist > ./ipaddresslist-tmp
# sudo設定
echo "${VMPREFIX}-2 to ${MAXVM}: sudo 設定"
for count in $(seq 1 $((MAXVM-1))); do
line=$(sed -n "${count}"P ./ipaddresslist-tmp)
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "sudo cat /etc/sudoers | grep $USERNAME" > sudotmp
if [ -z "$sudotmp" ]; then
echo "sudo: setting by ssh command"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "echo "$USERNAME ALL=NOPASSWD: ALL" | sudo tee -a /etc/sudoers"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "sudo grep $USERNAME /etc/sudoers"
unset sudotmp && rm ./sudotmp
else
echo "sudo: setting by run-command"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "echo '$USERNAME ALL=NOPASSWD: ALL' | sudo tee -a /etc/sudoers"
fi
done
# 高速化のためにSSHで一括設定しておく
echo "ssh parallel settings: nfs client"
parallel -a ipaddresslist-tmp "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo yum install --quiet -y nfs-utils epel-release""
parallel -a ipaddresslist-tmp "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo yum install --quiet -y htop""
parallel -a ipaddresslist-tmp "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo mkdir -p /mnt/resource""
parallel -a ipaddresslist-tmp "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo chown $USERNAME:$USERNAME /mnt/resource""
parallel -a ipaddresslist-tmp "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo mount -t nfs ${mountip}:/mnt/resource /mnt/resource""
rm ./ipaddresslist-tmp
# NFSサーバ・マウント設定
count=2
for count in $(seq 2 $MAXVM); do
line=$(sed -n "${count}"P ./ipaddresslist)
for cnt in $(seq 1 10); do
checkssh=$(ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "uname")
if [ -n "$checkssh" ]; then
break
fi
# sshが成功しなければ継続してsleep
echo "waiting sshd @ ${VMPREFIX}-${count}: $checkssh sleep 10" && sleep 10
done
if [ -n "$checkssh" ]; then
echo "${VMPREFIX}-2 to ${MAXVM}: ${count} setting by ssh command"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "sudo yum install --quiet -y nfs-utils epel-release"
# アフターインストール：epel-release
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "sudo yum install --quiet -y htop"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "sudo mkdir -p /mnt/resource"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "sudo chown $USERNAME:$USERNAME /mnt/resource"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "sudo mount $DEBUG -t nfs ${mountip}:/mnt/resource /mnt/resource"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "echo '${mountip}:/mnt/resource /mnt/resource nfs defaults 0 0' | sudo tee -a /etc/fstab"
else
echo "${VMPREFIX}-2 to ${MAXVM}: ${count} setting by az vm run-command"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts 'sudo yum install --quiet -y nfs-utils epel-release'
# アフターインストール：epel-release
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts 'sudo yum install --quiet -y htop'
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo mkdir -p /mnt/resource"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo chown $USERNAME:$USERNAME /mnt/resource"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo mount $DEBUG -t nfs ${mountip}:/mnt/resource /mnt/resource"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript \
--scripts "echo '${mountip}:/mnt/resource /mnt/resource xfs defaults 0 0' | sudo tee -a /etc/fstab"
fi
done
echo "end of mouting ${VMPREFIX}-1:/mnt/resource"
# SSHパスワードレスセッティング
echo "preparing for passwordless settings"
cat ./ipaddresslist
# SSH追加設定
if [ -f ./config ]; then rm ./config; fi
cat <<'EOL' >> config
Host *
StrictHostKeyChecking no
UserKnownHostsFile=/dev/null
EOL
echo "configuring passwordless settings"
parallel -a ipaddresslist "scp -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} ./${VMPREFIX} $USERNAME@{}:/home/$USERNAME/.ssh/${VMPREFIX}"
parallel -a ipaddresslist "scp -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} ./${VMPREFIX} $USERNAME@{}:/home/$USERNAME/.ssh/id_rsa"
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t "chmod 600 /home/$USERNAME/.ssh/id_rsa""
parallel -a ipaddresslist "scp -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} ./${VMPREFIX}.pub $USERNAME@{}:/home/$USERNAME/.ssh/${VMPREFIX}.pub"
# SSH追加設定
for count in $(seq 1 $MAXVM) ; do
line=$(sed -n "${count}"P ./ipaddresslist)
scp -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" ./config $USERNAME@"${line}":/home/$USERNAME/.ssh/config
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "chmod 600 /home/$USERNAME/.ssh/config"
done
# SSHローケール設定変更
echo "configuring /etc/ssh/config locale setting"
for count in $(seq 1 $MAXVM); do
locale=$(ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "grep 'LC_ALL=C' /home/$USERNAME/.bashrc")
if [ -z "$locale" ]; then
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "echo "export 'LC_ALL=C'" >> /home/$USERNAME/.bashrc"
else
echo "LC_ALL=C has arelady setting"
fi
done
# ホストファイル事前バックアップ（PBSノード追加設定向け）
echo "backup original hosts file"
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} "sudo cp /etc/hosts /etc/hosts.original""
# PBSノード：マウント設定
echo "pbsnode: nfs server @ ${VMPREFIX}-pbs"
# PBSノード：名前取得
pbsvmname=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-pbs --query name -o tsv)
# PBSノードがなければ終了
if [ -z "$pbsvmname" ]; then
echo "no PBS node here!"
exit 0
fi
# PBSノード：グローバルIPアドレス取得
pbsvmip=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-pbs --query publicIps -o tsv)
echo "${VMPREFIX}-pbs's public ip: $pbsvmip"
# PBSノード：マウント向けプライベートIPアドレス取得
pbsmountip=$(az vm show -g $MyResourceGroup --name ${VMPREFIX}-pbs -d --query privateIps -otsv)
echo "${VMPREFIX}-pbs's exports ip: $pbsmountip"
# インターネットからアクセス可能であれば、SSHで高速に設定する
# PBSノードのパブリックIPの判定
if [ -z "$pbsvmip" ]; then
# PBSノードのパブリックIPが空で、IPアドレスが取得できなければ、az cliでの取得
echo "pbsnode: confuguring nfs mount by by az vmruuning-commands"
for count in $(seq 1 $MAXVM) ; do
# コンピュートノード#1の/mnt/resourceをマウント
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo mkdir -p /mnt/share"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo chown $USERNAME:$USERNAME /mnt/share"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo mount -t nfs ${pbsmountip}:/mnt/share /mnt/share"
done
else
echo "pbsnode: confuguring nfs mount by ssh"
# pbsbmipが空でなければSSHでマウント情報の取得
echo "${VMPREFIX}-1: $pbsvmip"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" 'sudo showmount -e'
echo "${VMPREFIX}-1 to ${MAXVM}: mounting ${VMPREFIX}-pbs /mnt/share"
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo mkdir -p /mnt/share""
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo chown $USERNAME:$USERNAME /mnt/share""
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo mount -t nfs ${pbsmountip}:/mnt/share /mnt/share""
fi
# PBSノードがある場合にのみ、ホストファイル作成
# ホストファイル作成準備：既存ファイル削除
if [ -f ./vmlist ]; then rm ./vmlist; echo "recreating a new vmlist"; fi
if [ -f ./hostsfile ]; then rm ./hostsfile; echo "recreating a new hostsfile"; fi
if [ -f ./nodelist ]; then rm ./nodelist; echo "recreating a new nodelist"; fi
# ホストファイル作成
az vm list-ip-addresses -g $MyResourceGroup --query "[].virtualMachine.{VirtualMachine:name,PrivateIPAddresses:network.privateIpAddresses[0]}" -o tsv > tmphostsfile
# 自然な順番でソートする
sort -V ./tmphostsfile > tmphostsfile2
# vmlist 取り出し：1列目
cut -f 1 ./tmphostsfile2 > vmlist
# nodelist 取り出し：2列目
cut -f 2 ./tmphostsfile2 > nodelist
# ダブルクォーテーション削除: sed -i -e "s/\"//g" ./tmphostsfile
# ファイルの重複行削除。列は2列まで想定: cat ./tmphostsfile2 | awk '!colname[$1]++{print $1, "\t", $2}' > ./hostsfile
echo "show current hostsfile"
cat ./hostsfile
# テンポラリファイル削除
rm ./tmphostsfile
rm ./tmphostsfile2
### ===========================================================================
# PBSノード：ホストファイル転送・更新
checkssh=$(ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i "${SSHKEYDIR}" -t $USERNAME@"${pbsvmip}" "uname")
if [ -n "$checkssh" ]; then
# ssh成功すれば実施
echo "${VMPREFIX}-pbs: updating hosts file by ssh"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" -t -t "rm /home/$USERNAME/hostsfile"
scp -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" ./hostsfile $USERNAME@"${pbsvmip}":/home/$USERNAME/
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" -t -t "sudo cp /etc/hosts.original /etc/hosts"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" -t -t "cat /home/$USERNAME/hostsfile | sudo tee -a /etc/hosts"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" -t -t "sudo cat /etc/hosts | grep ${VMPREFIX}"
else
# SSH失敗した場合、az vm run-commandでのホストファイル転送・更新
echo "${VMPREFIX}-pbs: updating hosts file by az vm running command"
# ログインノードIPアドレス取得：空なら再取得
loginvmip=$(cat ./loginvmip)
if [ -n "$loginvmip" ]; then
loginvmip=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-login --query publicIps -o tsv)
fi
echo "loginvmip: $loginvmip"
echo "PBSノード: ssh: ホストファイル転送 local to login node"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${loginvmip}" -t -t "rm /home/$USERNAME/hostsfile"
scp -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" ./hostsfile $USERNAME@"${loginvmip}":/home/$USERNAME/
scp -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" ./${VMPREFIX} $USERNAME@"${loginvmip}":/home/$USERNAME/${VMPREFIX}
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${loginvmip}" -t -t "chmod 600 /home/$USERNAME/${VMPREFIX}"
echo "PBSノード: ssh: ホストファイル転送 ログインノード to PBSノード"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-pbs --command-id RunShellScript --scripts "scp -o StrictHostKeyChecking=no -i /home/$USERNAME/${VMPREFIX} $USERNAME@${loginprivateip}:/home/$USERNAME/hostsfile /home/$USERNAME/"
echo "PBSノード: az: ホストファイル更新"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-pbs --command-id RunShellScript --scripts "sudo cp /etc/hosts.original /etc/hosts"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-pbs --command-id RunShellScript --scripts "cat /home/$USERNAME/hostsfile | sudo tee -a /etc/hosts"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-pbs --command-id RunShellScript --scripts "cat /etc/hosts"
fi
# コンピュートノード：ホストファイル転送・更新
echo "copy hostsfile to all compute nodes"
count=0
for count in $(seq 1 $MAXVM); do
line=$(sed -n "${count}"P ./ipaddresslist)
# ログインノードへのSSHアクセスチェック
loginvmip=$(cat ./loginvmip)
if [ -n "$loginvmip" ]; then
loginvmip=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-login --query publicIps -o tsv)
fi
echo "loginvmip: $loginvmip"
# コンピュートノードへの直接SSHアクセスチェック
vm1ip=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-1 --query publicIps -o tsv)
checkssh=$(ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "uname")
echo "checkssh: $checkssh"
if [ -n "$checkssh" ]; then
echo "${VMPREFIX}-1 to ${MAXVM}: updating hostsfile by ssh(direct)"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "rm /home/$USERNAME/hostsfile"
scp -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" ./hostsfile $USERNAME@"${line}":/home/$USERNAME/
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "sudo cp /etc/hosts.original /etc/hosts"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "sudo cp /home/$USERNAME/hostsfile /etc/hosts"
echo "${VMPREFIX}-${count}: show new hosts file"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "sudo cat /etc/hosts | grep ${VMPREFIX}"
else
# ログインノード経由で設定
checkssh2=$(ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i "${SSHKEYDIR}" $USERNAME@"${loginvmip}" -t -t "uname")
if [ -n "$checkssh2" ]; then
echo "${VMPREFIX}-1 to ${MAXVM}: updating hostsfile by ssh(via login node)"
# 多段SSH
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${loginvmip}" -t -t "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@${line} -t -t "rm /home/$USERNAME/hostsfile""
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${loginvmip}" -t -t "scp -o StrictHostKeyChecking=no -i ${SSHKEYDIR} ./hostsfile $USERNAME@${line}:/home/$USERNAME/"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${loginvmip}" -t -t "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@${line} -t -t "sudo cp /etc/hosts.original /etc/hosts""
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${loginvmip}" -t -t "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@${line} -t -t "sudo cp /home/$USERNAME/hostsfile /etc/hosts""
echo "${VMPREFIX}-${count}: show new hosts file"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${loginvmip}" -t -t "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@${line} -t -t "sudo cat /etc/hosts | grep ${VMPREFIX}""
else
# SSHできないため、az vm run-commandでのホストファイル転送・更新
echo "${VMPREFIX}-${count}: updating hosts file by az vm running command"
# ログインノードIPアドレス取得：取得済み
echo "loginvmip: $loginvmip"
echo "ローカル: ssh: ホストファイル転送 transfer login node"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${loginvmip}" -t -t "rm /home/$USERNAME/hostsfile"
scp -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" ./hostsfile $USERNAME@"${loginvmip}":/home/$USERNAME/
scp -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" ./${VMPREFIX} $USERNAME@"${loginvmip}":/home/$USERNAME/
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${loginvmip}" -t -t "chmod 600 /home/$USERNAME/${VMPREFIX}"
# ログインプライベートIPアドレス取得：すでに取得済み
#loginprivateip=$(az vm show -g $MyResourceGroup --name ${VMPREFIX}-login -d --query privateIps -o tsv)
for count2 in $(seq 1 $MAXVM); do
# ログインノードへはホストファイル転送済み
echo "コンピュートノード： az: ホストファイル転送 login to compute node"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count2}" --command-id RunShellScript --scripts "scp -o StrictHostKeyChecking=no -i /home/$USERNAME/${VMPREFIX} $USERNAME@${loginprivateip}:/home/$USERNAME/hostsfile /home/$USERNAME/"
echo "コンピュートノード： az: ホストファイル更新"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count2}" --command-id RunShellScript --scripts "sudo cp /etc/hosts.original /etc/hosts"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count2}" --command-id RunShellScript --scripts "sudo cp /home/$USERNAME/hostsfile /etc/hosts"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count2}" --command-id RunShellScript --scripts "sudo cat /etc/hosts"
done
fi
fi
done
# ホストファイル更新完了
echo "end of hostsfile update"
# 追加ノードのPBS設定：実装済み。追加の場合、ダイレクトSSHが必須
### ===========================================================================
# ローカルにopenPBSファイルがあるのは前提
# PBSノード：openPBSクライアントコピー
echo "copy openpbs-execution-20.0.1-0.x86_64.rpm to all compute nodes"
parallel -a ipaddresslist "scp -o StrictHostKeyChecking=no -o 'ConnectTimeout 360' -i ${SSHKEYDIR} ./openpbs-execution-20.0.1-0.x86_64.rpm $USERNAME@{}:/home/$USERNAME/"
# ダウンロード、およびMD5チェック
count=0
if [ -f ./md5executionremote ]; then rm ./md5executionremote; fi
if [ -f ./md5executionremote2 ]; then rm ./md5executionremote2; fi
# CentOS バージョンチェック
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" -t -t "cat /etc/redhat-release" > centosversion
centosversion=$(cat -d " " -f 4)
# CentOS 7.x か 8.xか判別する
case $centosversion in
7.?.???? )
# CentOS 7.xの場合
for count in $(seq 1 $MAXVM); do
line=$(sed -n "${count}"P ./ipaddresslist)
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "md5sum /home/$USERNAME/openpbs-execution-20.0.1-0.x86_64.rpm | cut -d ' ' -f 1" > md5executionremote
md5executionremote=$(cat ./md5executionremote)
echo "md5executionremote: $md5executionremote"
for cnt in $(seq 1 3); do
if [ "$md5executionremote" == "$md5execution" ]; then
# 固定ではうまくいかない
# if [ "$md5executionremote" != "59f5110564c73e4886afd579364a4110" ]; then
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "rm /home/$USERNAME/openpbs-execution-20.0.1-0.x86_64.rpm"
scp -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" ./openpbs-execution-20.0.1-0.x86_64.rpm $USERNAME@"${line}":/home/$USERNAME/openpbs-execution-20.0.1-0.x86_64.rpm
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "md5sum /home/$USERNAME/openpbs-execution-20.0.1-0.x86_64.rpm | cut -d ' ' -f 1" > md5executionremote
md5executionremote=$(cat ./md5executionremote)
echo "md5executionremote: $md5executionremote"
echo "md5executionremote2: $md5executionremote2"
for cnt2 in $(seq 1 3); do
echo "checking md5...: $cnt2"
if [ "$md5executionremote2" != "$md5execution" ]; then
# 固定ではうまくいかない
# if [ "$md5executionremote2" != "59f5110564c73e4886afd579364a4110" ]; then
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "rm /tmp/openpbs-execution-20.0.1-0.x86_64.rpm"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "wget -q $baseurl/openpbs-execution-20.0.1-0.x86_64.rpm -O /tmp/openpbs-execution-20.0.1-0.x86_64.rpm"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "md5sum /tmp/openpbs-execution-20.0.1-0.x86_64.rpm | cut -d ' ' -f 1" > md5executionremote2
md5executionremote2=$(cat ./md5executionremote2)
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "cp /tmp/openpbs-execution-20.0.1-0.x86_64.rpm /home/$USERNAME/openpbs-execution-20.0.1-0.x86_64.rpm"
echo "md5executionremote2: $md5executionremote2"
else
echo "match md5 by md5executionremote2"
md5executionremote2=$(cat ./md5executionremote2)
break
fi
done
else
echo "match md5 by md5executionremote"
md5executionremote=$(cat ./md5executionremote)
break
fi
done
done
;;
8.?.???? )
echo "skip check md5"
;;
esac
rm ./centosversion
rm ./md5executionremote
rm ./md5executionremote2
# openPBSクライアント：インストール
echo "confuguring all compute nodes"
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t 'sudo yum install --quiet -y hwloc-libs libICE libSM'"
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t 'sudo yum install --quiet -y libnl3'"
echo "installing libnl3"
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo yum install --quiet -y /home/$USERNAME/openpbs-execution-20.0.1-0.x86_64.rpm""
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t 'sudo rpm -aq | grep openpbs'"
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t 'sudo /opt/pbs/libexec/pbs_habitat'"
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t 'sudo /opt/pbs/libexec/pbs_postinstall'"
# pbs.confファイル生成
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo sed -i -e 's/PBS_START_MOM=0/PBS_START_MOM=1/g' /etc/pbs.conf""
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo sed -i -e s/CHANGE_THIS_TO_PBS_SERVER_HOSTNAME/${VMPREFIX}-pbs/g /etc/pbs.conf""
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo cat /etc/pbs.conf""
# openPBSクライアント：パーミッション設定
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t 'sudo chmod 4755 /opt/pbs/sbin/pbs_iff'"
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t 'sudo chmod 4755 /opt/pbs/sbin/pbs_rcp'"
# openPBSクライアント：/var/spool/pbs/mom_priv/config コンフィグ設定
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo sed -i -e s/CHANGE_THIS_TO_PBS_SERVER_HOSTNAME/${VMPREFIX}-pbs/g /var/spool/pbs/mom_priv/config""
for count in $(seq 1 $MAXVM) ; do
line=$(sed -n "${count}"P ./ipaddresslist)
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${line}" -t -t "sudo sed -i -e s/CHANGE_THIS_TO_PBS_SERVER_HOSTNAME/${VMPREFIX}-pbs/g /var/spool/pbs/mom_priv/config"
done
### ===========================================================================
# PBSプロセス起動
# PBSノード起動＆$USERNAME環境変数設定
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" -t -t "grep pbs.sh /home/azureuser/.bashrc" > ./pbssh
pbssh=$(cat ./pbssh)
if [ -z "$pbssh" ]; then
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" -t -t "yes | sudo /etc/init.d/pbs start"
fi
# openPBSクライアントノード起動＆$USERNAME環境変数設定
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t 'sudo /etc/init.d/pbs start'"
vm1ip=$(head -n 1 ./ipaddresslist)
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" -t -t "grep pbs.sh /home/azureuser/.bashrc" > ./pbssh
pbssh=$(cat ./pbssh)
if [ -z "$pbssh" ]; then
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i ${SSHKEYDIR} $USERNAME@{} -t -t 'echo 'source /etc/profile.d/pbs.sh' >> $HOME/.bashrc'"
fi
rm ./pbssh
echo "finished to set up additonal login and PBS node"
### ===========================================================================
# PBSジョブスケジューラセッティング
echo "configpuring PBS settings"
rm ./setuppbs.sh
for count in $(seq 1 $MAXVM); do
echo "/opt/pbs/bin/qmgr -c "create node ${VMPREFIX}-${count}"" >> setuppbs.sh
done
sed -i -e "s/-c /-c '/g" setuppbs.sh
sed -i -e "s/$/\'/g" setuppbs.sh
echo "setuppbs.sh: $(cat ./setuppbs.sh)"
scp -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" ./setuppbs.sh $USERNAME@"${pbsvmip}":/home/$USERNAME/setuppbs.sh
# SSH鍵登録
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" -t -t "sudo cp /root/.ssh/authorized_keys /root/.ssh/authorized_keys.old"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" -t -t "sudo cp /home/$USERNAME/.ssh/authorized_keys /root/.ssh/authorized_keys"
# ジョブスケジューラセッティング
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" root@"${pbsvmip}" -t -t "bash /home/$USERNAME/setuppbs.sh"
### ===========================================================================
;;
start )
## PBSノード：OSディスクタイプ変更: Premium_LRS
azure_sku2="Premium_LRS"
# PBSノードの存在チェック
osdiskidpbs=$(az vm show -g $MyResourceGroup --name ${VMPREFIX}-pbs --query storageProfile.osDisk.managedDisk.id -o tsv)
if [ -n "$osdiskidpbs" ]; then
az disk update --sku ${azure_sku2} --ids "${osdiskidpbs}" -o table
echo "starting PBS VM"
az vm start -g $MyResourceGroup --name ${VMPREFIX}-pbs -o none &
# 今のところPBSノードが存在すればログインノードも存在する
echo "starting loging VM"
az vm start -g $MyResourceGroup --name ${VMPREFIX}-login -o none &
else
# PBSノードのＯＳディスクが存在しなければPBSノードも存在しない
echo "no PBS node here!"
fi
echo "starting VM ${VMPREFIX}-1"
az vm start -g $MyResourceGroup --name ${VMPREFIX}-1 -o none &
echo "starting VM ${VMPREFIX}:2-$MAXVM compute nodes"
seq 2 $MAXVM | parallel "az vm start -g $MyResourceGroup --name ${VMPREFIX}-{} -o none &"
sleep 60
echo "checking $MAXVM compute VM's status"
numvm=0
tmpnumvm="default"
while [ -n "$tmpnumvm" ]; do
tmpnumvm=$(az vm list -d -g $MyResourceGroup --query "[?powerState=='VM starting']" -o tsv)
echo "$tmpnumvm" | tr ' ' '\n' > ./tmpnumvm.txt
numvm=$(grep -c "starting" ./tmpnumvm.txt)
echo "current starting VMs: $numvm. All VMs are already running!"
sleep 5
done
rm ./tmpnumvm.txt
echo "checking VM public ip"
# ダイナミックの場合（デフォルト）、再度IPアドレスリストを作成しなおす
# コンピュートノードVM#1のパブリックIPが同じならスキップする
vm1ip=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-1 --query publicIps -o tsv)
echo "${VMPREFIX}-1's IP: $vm1ip"
prevm1ip=$(head -n 1 ./ipaddresslist)
if [ "$prevm1ip" != "$vm1ip" ]; then
echo "making new ipaddress list"
count=1
for count in $(seq 1 $MAXVM) ; do
echo "VM $count: ${VMPREFIX}-$count"
unset ipaddresstmp
while [ -z "$ipaddresstmp" ]; do
ipaddresstmp=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --query publicIps -o tsv)
echo "ip: $ipaddresstmp"
done
echo "$ipaddresstmp" >> ipaddresslist
done
echo "new ipaddress list"
cat ./ipaddresslist
else
echo "not canage ipaddress list"
fi
# コンピュートノードVM#1のマウントするプライベートIPの取得
mountip=$(az vm show -g $MyResourceGroup --name ${VMPREFIX}-1 -d --query privateIps -o tsv)
echo "${VMPREFIX}-1: nfs exports ip: $mountip"
# インターネットからアクセス可能であれば、SSHで高速に設定する
if [ -z "$vm1ip" ]; then
# vm1ipがパブリックIPが空でIPアドレスが取得できなければ、az cliでの取得
# コンピュートノード#1：マウント設定
echo "nfs server @ ${VMPREFIX}-1"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "sudo showmount -e"
for count in $(seq 2 $MAXVM) ; do
# 並列化・時間短縮は検討事項
echo "${VMPREFIX}-1: configuring nfs mount by az vmruuning-commands"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo mkdir -p /mnt/resource"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo chown $USERNAME:$USERNAME /mnt/resource"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo mount $DEBUG -t nfs ${mountip}:/mnt/resource /mnt/resource"
done
else
# vm1ipが空でなければSSHでマウントを実施
echo "${VMPREFIX}-1: confuguring nfs mount by ssh"
echo "${VMPREFIX}-1: $vm1ip"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" 'sudo showmount -e'
# 1行目を削除したIPアドレスリストを作成
sed '1d' ./ipaddresslist > ./ipaddresslist-tmp
echo "${VMPREFIX}-2 to $MAXVM: mounting ${VMPREFIX}-1 /mnt/resource"
parallel -a ipaddresslist-tmp "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo mkdir -p /mnt/resource""
parallel -a ipaddresslist-tmp "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo chown $USERNAME:$USERNAME /mnt/resource""
parallel -a ipaddresslist-tmp "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo mount -t nfs ${mountip}:/mnt/resource /mnt/resource""
fi
echo "end of starting up computing nodes"
# PBSノードがなければ終了
if [ -z "$osdiskidpbs" ]; then
echo "no PBS node here!"
exit 0
fi
# PBSノード：マウント設定
echo "pbsnode: nfs server @ ${VMPREFIX}-pbs"
# PBSノード：名前取得
pbsvmname=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-pbs --query name -o tsv)
# PBSノード：グローバルIPアドレス取得
pbsvmip=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-pbs --query publicIps -o tsv)
echo "${VMPREFIX}-pbs's public ip: $pbsvmip"
# PBSノード：マウント向けプライベートIPアドレス取得
pbsmountip=$(az vm show -g $MyResourceGroup --name ${VMPREFIX}-pbs -d --query privateIps -otsv)
echo "${VMPREFIX}-pbs's exports ip: $pbsmountip"
# インターネットからアクセス可能であれば、SSHで高速に設定する
if [ -n "$pbsvmname" ]; then
# vm1ipが空なら、IPアドレスが取得できなければ、az cliでの取得
if [ -z "$pbsvmip" ]; then
echo "pbsnode: confuguring nfs mount by by az vmruuning-commands"
# コンピュートノード#1のみ実施
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "sudo mkdir -p /mnt/share"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "sudo chown $USERNAME:$USERNAME /mnt/share"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "sudo mount -t nfs ${pbsmountip}:/mnt/share /mnt/share"
for count in $(seq 2 $MAXVM) ; do
# コンピュートノード#1をマウント
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo mkdir -p /mnt/share"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo chown $USERNAME:$USERNAME /mnt/share"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --command-id RunShellScript --scripts "sudo mount -t nfs ${pbsmountip}:/mnt/share /mnt/share"
done
else
echo "pbsnode: confuguring nfs mount by ssh"
# pbsbmipが空でなければSSHでマウント情報の取得
echo "${VMPREFIX}-1: $pbsvmip"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" 'sudo showmount -e'
echo "${VMPREFIX}-1 to $MAXVM: mounting ${VMPREFIX}-pbs /mnt/share"
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo mkdir -p /mnt/share""
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo chown $USERNAME:$USERNAME /mnt/share""
parallel -a ipaddresslist "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo mount -t nfs ${pbsmountip}:/mnt/share /mnt/share""
# vm1ipが空でなければSSHでマウント情報の取得
echo "${VMPREFIX}-1: $vm1ip"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" 'sudo showmount -e'
echo "${VMPREFIX}-2 to $MAXVM: mounting ${VMPREFIX}-1 /mnt/resource"
parallel -a ipaddresslist-tmp "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo mkdir -p /mnt/resource""
parallel -a ipaddresslist-tmp "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo chown $USERNAME:$USERNAME /mnt/resource""
parallel -a ipaddresslist-tmp "ssh -o StrictHostKeyChecking=no -i ${SSHKEYDIR} $USERNAME@{} -t -t "sudo mount -t nfs ${mountip}:/mnt/resource /mnt/resource""
fi
echo "end of PBS mount check"
fi
rm ./ipaddresslist-tmp
echo "end of start command"
;;
startvm )
# PBSノードの存在チェック
osdiskidpbs=$(az vm show -g $MyResourceGroup --name ${VMPREFIX}-pbs --query storageProfile.osDisk.managedDisk.id -o tsv)
# VM # $2 起動開始
echo "starting VM ${VMPREFIX}-$2"
az vm start -g $MyResourceGroup --name ${VMPREFIX}-"$2" -o none &
echo "checking VM public ip"
# ダイナミックの場合（デフォルト）、再度IPアドレスリストを作成しなおす
# コンピュートノードVM#1のパブリックIPが同じならスキップする
vmip=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-"$2" --query publicIps -o tsv)
existvmip=$(sed -n "${2}"P ./ipaddresslist)
echo "new ${VMPREFIX}-1's IP: $vm1ip"
# 置換実施
if [ "$existvmip" != "$vmip" ]; then
echo "making new vm $2 ipaddress replace in the list"
sed "$2c $vmip" ./ipaddresslist
echo "new ipaddress list"
cat ./ipaddresslist
else
echo "not canage vm $2 ipaddress list"
fi
# コンピュートノードVM#1のマウントするプライベートIPの取得
mountip=$(az vm show -g $MyResourceGroup --name ${VMPREFIX}-1 -d --query privateIps -o tsv)
echo "${VMPREFIX}-1: nfs exports ip: $mountip"
checkssh=$(ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i "${SSHKEYDIR}" -t $USERNAME@"${vmip}" "uname")
# インターネットからアクセス可能であれば、SSHで高速に設定する
if [ -z "$vmip" ]; then
# vmipがパブリックIPが空でIPアドレスが取得できなければ、az cliでの取得
echo "${VMPREFIX}-1: configuring nfs mount by az vmruuning-commands"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"$2" --command-id RunShellScript --scripts "sudo mkdir -p /mnt/resource"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"$2" --command-id RunShellScript --scripts "sudo chown $USERNAME:$USERNAME /mnt/resource"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"$2" --command-id RunShellScript --scripts "sudo mount $DEBUG -t nfs ${mountip}:/mnt/resource /mnt/resource"
else
echo "${VMPREFIX}-$2: mounting ${VMPREFIX}-$2 /mnt/resource"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vmip}" -t -t "sudo mkdir -p /mnt/resource"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vmip}" -t -t "sudo chown $USERNAME:$USERNAME /mnt/resource"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vmip}" -t -t "sudo mount $DEBUG -t nfs ${mountip}:/mnt/resource /mnt/resource"
fi
echo "end of starting up computing nodes"
# PBSノードがなければ終了
if [ -z "$osdiskidpbs" ]; then
echo "no PBS node here!"
exit 0
fi
# PBSノード：マウント設定
echo "pbsnode: nfs server @ ${VMPREFIX}-pbs"
# PBSノード：名前取得
pbsvmname=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-pbs --query name -o tsv)
# PBSノード：グローバルIPアドレス取得
pbsvmip=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-pbs --query publicIps -o tsv)
echo "${VMPREFIX}-pbs's public ip: $pbsvmip"
# PBSノード：マウント向けプライベートIPアドレス取得
pbsmountip=$(az vm show -g $MyResourceGroup --name ${VMPREFIX}-pbs -d --query privateIps -otsv)
echo "${VMPREFIX}-pbs's exports ip: $pbsmountip"
# インターネットからアクセス可能であれば、SSHで高速に設定する
if [ -n "$pbsvmname" ]; then
# vm1ipが空なら、IPアドレスが取得できなければ、az cliでの取得
if [ -z "$pbsvmip" ]; then
echo "pbsnode: confuguring nfs mount by by az vmruuning-commands"
# コンピュートノード# $2 実施: PBS
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"$2" --command-id RunShellScript --scripts "sudo mkdir -p /mnt/share"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"$2"--command-id RunShellScript --scripts "sudo chown $USERNAME:$USERNAME /mnt/share"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-"$2" --command-id RunShellScript --scripts "sudo mount $DEBUG -t nfs ${pbsmountip}:/mnt/share /mnt/share"
else
echo "pbsnode: confuguring nfs mount by ssh"
# pbsbmipが空でなければSSHでマウント情報の取得
echo "${VMPREFIX}-1: $pbsvmip"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" 'sudo showmount -e'
echo "${VMPREFIX}-1 to $MAXVM: mounting ${VMPREFIX}-pbs /mnt/share"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vmip}" -t -t "sudo mkdir -p /mnt/share"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vmip}" -t -t "sudo chown $USERNAME:$USERNAME /mnt/share"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vmip}" -t -t "sudo mount $DEBUG -t nfs ${pbsmountip}:/mnt/share /mnt/share"
fi
echo "end of PBS mount check"
fi
rm ./ipaddresslist-tmp
echo "end of start command"
;;
stop )
for count in $(seq 1 $MAXVM) ; do
echo "stoping VM $count"
az vm deallocate -g $MyResourceGroup --name ${VMPREFIX}-"${count}" &
done
;;
stop-all )
for count in $(seq 1 $MAXVM) ; do
echo "stoping VM $count"
az vm deallocate -g $MyResourceGroup --name ${VMPREFIX}-"${count}" &
done
echo "stoping PBS VM"
az vm deallocate -g $MyResourceGroup --name ${VMPREFIX}-pbs &
echo "stoping login VM"
az vm deallocate -g $MyResourceGroup --name ${VMPREFIX}-login &
# OSディスクタイプ変更: Standard_LRS
azure_sku1="Standard_LRS"
echo "converting computing node OS disk"
parallel -v -a ./tmposdiskidlist "az disk update --sku ${azure_sku1} --ids {}"
# Dataディスクタイプ変更: Standard_LRS
echo "converting PBS node data disk"
az vm show -g $MyResourceGroup --name ${VMPREFIX}-pbs --query storageProfile.dataDisks[*].managedDisk -o tsv | awk -F" " '{print $2}' | xargs -I{} az disk update --sku ${azure_sku1} --ids {}
echo "converting compute node #1 data disk"
az vm show -g $MyResourceGroup --name ${VMPREFIX}-1 --query storageProfile.dataDisks[*].managedDisk -o tsv | awk -F" " '{print $2}' | xargs -I{} az disk update --sku ${azure_sku1} --ids {}
;;
stopvm )
echo "コマンドシンタクス:VM#2を停止する場合 ./$CMDNAME stopvm 2"
echo "stoping VM $2"
az vm deallocate -g $MyResourceGroup --name ${VMPREFIX}-"$2" &
;;
stopvms )
echo "コマンドシンタクス:VM#2,3,4を停止する場合 ./$CMDNAME stopvm 2 4"
echo "stoping VM $2 $3"
for count in $(seq "$2" "$3") ; do
echo "stoping VM $count"
az vm deallocate -g $MyResourceGroup --name ${VMPREFIX}-"${count}" &
done
;;
list )
echo "listng running/stopped VM"
az vm list -g $MyResourceGroup -d -o table
echo "nfs server vm status"
# vm1state=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-1 --query powerState)
vm1ip=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-1 --query publicIps -o tsv)
pbsvmip=$(az vm show -d -g $MyResourceGroup --name ${VMPREFIX}-pbs --query publicIps -o tsv)
# PBSノードのパブリックIPアドレスの判定
if [ -z "$pbsvmip" ]; then
echo "no PBS node here! checking only compute nodes."
# コンピュートノードのみのチェック
count=0
checkssh=$(ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i "${SSHKEYDIR}" -t $USERNAME@"${vm1ip}" "uname")
if [ -n "$checkssh" ]; then
echo "${VMPREFIX}-1: nfs server status"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" 'sudo showmount -e'
echo "nfs client mount status"
for count in $(seq 2 $MAXVM); do
line=$(sed -n "${count}"P ./ipaddresslist)
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" -t -t $USERNAME@"${line}" "echo '########## host: ${VMPREFIX}-${count} ##########'"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" -t -t $USERNAME@"${line}" "df | grep '/mnt/'"
done
else
# SSHできないのでaz vm run-commandでの情報取得
echo "az vm run-command: nfs server status"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "sudo showmount -e"
echo "nfs client mount status:=======1-2 others: skiped======="
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "df | grep /mnt/"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-2 --command-id RunShellScript --scripts "df | grep /mnt/"
fi
# コンピュートノードVM#1のマウントだけ完了し、コマンド完了
echo "end of list command"
exit 0
fi
# PBSノード、コンピュートノードのNFSマウント確認
count=0
checkssh=$(ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i "${SSHKEYDIR}" -t $USERNAME@"${vm1ip}" "uname")
checkssh2=$(ssh -o StrictHostKeyChecking=no -o 'ConnectTimeout 30' -i "${SSHKEYDIR}" -t $USERNAME@"${pbsvmip}" "uname")
if [ -n "$checkssh" ] && [ -n "$checkssh2" ]; then
echo "${VMPREFIX}-pbs: nfs server status"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${pbsvmip}" 'sudo showmount -e'
echo "${VMPREFIX}-1: nfs server status"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" $USERNAME@"${vm1ip}" 'sudo showmount -e'
echo "nfs client mount status"
for count in $(seq 2 $MAXVM); do
line=$(sed -n "${count}"P ./ipaddresslist)
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" -t -t $USERNAME@"${line}" "echo '########## host: ${VMPREFIX}-${count} ##########'"
ssh -o StrictHostKeyChecking=no -i "${SSHKEYDIR}" -t -t $USERNAME@"${line}" "df | grep '/mnt/'"
done
else
echo "az vm run-command: nfs server status"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-pbs --command-id RunShellScript --scripts "sudo showmount -e"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "sudo showmount -e"
echo "nfs client mount status:=======1-2 others: skiped======="
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-1 --command-id RunShellScript --scripts "df | grep /mnt/"
az vm run-command invoke -g $MyResourceGroup --name ${VMPREFIX}-2 --command-id RunShellScript --scripts "df | grep /mnt/"
fi
;;
delete )
if [ -f ./tmposdiskidlist ]; then rm ./tmposdiskidlist; fi
for count in $(seq 1 $MAXVM) ; do
disktmp=$(az vm show -g $MyResourceGroup --name ${VMPREFIX}-"${count}" --query storageProfile.osDisk.managedDisk.id -o tsv)
echo "$disktmp" >> tmposdiskidlist
done
echo "deleting compute VMs"
seq 1 $MAXVM | parallel "az vm delete -g $MyResourceGroup --name ${VMPREFIX}-{} --yes &"
numvm=$(cat ./vmlist | wc -l)
checkpbs=$(grep pbs ./vmlist)
if [ -n "$checkpbs" ]; then
# no pbs
while [ $((numvm)) -gt 2 ]; do
echo "sleep 30" && sleep 30
echo "current running VMs: $numvm"
az vm list -g $MyResourceGroup | jq '.[] | .name' | grep ${VMPREFIX} > ./vmlist
numvm=$(cat ./vmlist | wc -l)
done
echo "deleted all compute VMs"
else
# pbs node existing
while [ $((numvm)) -gt 0 ]; do
echo "sleep 30" && sleep 30
echo "current running VMs: $numvm"
az vm list -g $MyResourceGroup | jq '.[] | .name' | grep ${VMPREFIX} > ./vmlist
numvm=$(cat ./vmlist | wc -l)
done
fi
echo "deleted all compute VMs. PBS and login node are existing"
echo "deleting disk"
parallel -a tmposdiskidlist "az disk delete --ids {} --yes"
sleep 10
# STATICMAC が true であればNIC、パブリックIPを再利用する
if [ "$STATICMAC" == "true" ] || [ "$STATICMAC" == "TRUE" ]; then
echo "keep existing nic and public ip"
else
echo "deleting nic"
seq 1 $MAXVM | parallel "az network nic delete -g $MyResourceGroup --name ${VMPREFIX}-{}VMNic"
echo "deleting public ip"
seq 1 $MAXVM | parallel "az network public-ip delete -g $MyResourceGroup --name ${VMPREFIX}-{}PublicIP"
fi
echo "detele data disk"
az disk delete -g $MyResourceGroup --name ${VMPREFIX}-1-disk0 --yes
echo "current running VMs: ${numvm}"
# ファイル削除
rm ./ipaddresslist
rm ./tmposdiskidlist
rm ./vmlist
rm ./nodelist
;;
delete-all )
if [ -f ./tmposdiskidlist ]; then
rm ./tmposdiskidlist
fi
for count in $(seq 1 $MAXVM) ; do