From 579dff4cc15193024b8964e50faab27f065b8f02 Mon Sep 17 00:00:00 2001 From: alexvpickering Date: Wed, 11 Sep 2019 12:21:11 -0400 Subject: [PATCH] fix kallisto path --- R/build_kallisto_index.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/R/build_kallisto_index.R b/R/build_kallisto_index.R index 185fbcf..e55072a 100644 --- a/R/build_kallisto_index.R +++ b/R/build_kallisto_index.R @@ -15,7 +15,7 @@ #' # build kallist index for humans #' build_kallisto_index(indices_dir) #' -build_kallisto_index <- function(species = 'homo_sapiens', release = '94', kallisto_path = '/home/ubuntu/miniconda2/bin/kallisto') { +build_kallisto_index <- function(species = 'homo_sapiens', release = '94', kallisto_path = '/home/ubuntu/miniconda/bin/kallisto') { indices_dir <- system.file(package = 'drugseqr.data') indices_dir <- file.path(indices_dir, 'indices/kallisto')